BAC Information

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BAC

Clone NameMSMg01-466N06
Chromosome7 (Build37)
Map Location 98,345,622 - 98,345,996
singlet/doubletsinglet
Overlap geneDlg2
Upstream genePicalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik, LOC666689, LOC621816, LOC100039943
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466N06.T7 (MSMg01no466_n06.b1)MSMg01-466N06.TJ (MSMg01no466_n06.g1)
ACCAG550683AG550684
length805779
length of high quality
(start - end)
374 (71 - 444)429 (81 - 509)
definitionCHROMAT_FILE: MSMg01no466_n06.b1 PHD_FILE: MSMg01no466_n06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:28 2005CHROMAT_FILE: MSMg01no466_n06.g1 PHD_FILE: MSMg01no466_n06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGATCCG
CGGAATTCATTATTTATCATATTTCTCGAGCATCATAAATAGAGATTACT
TTATTGAAGCATTGCCATAAAATAAAAAAAATATTTTATGTGCATTCTAA
AATAATCCTCACATAACCTAGCAATATAGCTTCTTTTAAACTATCACTTT
CAGATGGAATTTATGCATCAACAGTATTTTTAAATACTGTGTCTGTCATG
AGGGAGTTCATTCTCTTGACAGAGAATTAAGATGCTTACATATATAGCAG
AACAGATTTTTAAAATATGATTTTTCCATAAAGTTGACACAATTTTGATA
AAGGAACAGGTACTCTTCTCACTCACATTTTCCCTTTGAAAATTCAGCTG
TGATGACACTGCTTCTGAAATACCCTTTGTGTACTTGATAAGCTCACACA
CAAGCCAGGATCCTTGAGGATCAGTGTTTGCTTTCCACATGACTATGTTC
CCATGGTTGAATGGTTTGAAGGTCGATACTTCTTGTTCTCTTGTCTTCGT
ATAACCGACTCTAAAACTAACTTTGCCTTTATTTTCATTTTGCCCTCTTT
GTTTTTCATATTATTTTTCCCCCCCCTCCGCGTCTAATTTCTTTTTCCTA
TTACCTTTTCCATTTTCCTTTAGCTTTCTTTATACGCTTATTCTTTTACC
TTTTACCTTTATTTCCCTCTTATTTTTTTTTTTTTACCCTATTACCTCCA
CCCTTTTATTACTCCGCGATTTATTATTTCCTCACTTTTTTTATATATAT
CTCCN
CCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCT
GGAAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACTGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTTCCTAGCCAATGGATGCGACCTGGAAGGGCTCCTC
CTTGAGTGGAGTAACACCTTTCACCAAAGGAACTCCACCCAATAAGGTAA
TCCCTGAGAAAGGGGGATATAATCCCCCAATACTTGGTATACCCCAAAAT
AATACGATACCTTTTTTTTTATACACCTGGGATATTCTATAATAAAATGT
TCACTGGCCGTGCGGGCGCATTCCTTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_n06.b1 MSMg01no466_n06.b1 CHROMAT_FILE:
MSMg01no466_n06.b1 PHD_FILE: MSMg01no466_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:28 2005
         (374 letters)



>mm_chr7_98345423_98346196
          Length = 774

 Score =  687 bits (355), Expect = 0.0
 Identities = 370/375 (98%), Gaps = 1/375 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttctcgagcatcataaatagagattactttattgaagcattgccataaaat-aaaaaa 59
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 200 atttctcgagcatcataaatagagattactttattgaagcattgccataaaataaaaaaa 259

                                                                       
Query: 60  aatattttatgtgcattctaaaataatcctcacataacctagcaatatagcttcttttaa 119
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 260 aatattttatgtgcattctaaaataatcctcacataacctagcaatgtagcttcttttaa 319

                                                                       
Query: 120 actatcactttcagatggaatttatgcatcaacagtatttttaaatactgtgtctgtcat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 320 actatcactttcagatggaatttatgcatcaacagtatttttaaatactttgtctgtcat 379

                                                                       
Query: 180 gagggagttcattctcttgacagagaattaagatgcttacatatatagcagaacagattt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gagggagttcattctcttgacagagaattaagatgcttacatatatagcagaacagattt 439

                                                                       
Query: 240 ttaaaatatgatttttccataaagttgacacaattttgataaaggaacaggtactcttct 299
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttaaaatatgatggttccataaagttgacacaattttgataaaggaacaggtactcttct 499

                                                                       
Query: 300 cactcacattttccctttgaaaattcagctgtgatgacactgcttctgaaataccctttg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cactcacattttccctttgaaaattcagctgtgatgacactgcttctgaaataccctttg 559

                          
Query: 360 tgtacttgataagct 374
           |||||||||||||||
Sbjct: 560 tgtacttgataagct 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)