BAC Information

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BAC

Clone NameMSMg01-467E04
Chromosome7 (Build37)
Map Location 151,472,570 - 151,645,427
singlet/doubletdoublet
Overlap geneShank2, Cttn
Upstream geneKcnq1, Cdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5, Mrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498
Downstream genePpfia1, Fadd, Tmem16a, LOC669079, LOC677315, Fgf3, Fgf4, Fgf15, Oraov1, Ccnd1, 1810010D01Rik, LOC100040049, Tpcn2, Mrgprf, Mrgprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467E04.T7 (MSMg01no467_e04.b1)MSMg01-467E04.TJ (MSMg01no467_e04.g1)
ACCAG551012AG551013
length703790
length of high quality
(start - end)
382 (76 - 457)256 (77 - 332)
definitionCHROMAT_FILE: MSMg01no467_e04.b1 PHD_FILE: MSMg01no467_e04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:04 2005CHROMAT_FILE: MSMg01no467_e04.g1 PHD_FILE: MSMg01no467_e04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,645,046 - 151,645,427)(151,472,570 - 151,472,810)
sequence
TCCCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATC
CGCGGAATTCCAGATTTTCCTCAGCCAGCCTCATTCAGGGTAGCACATAC
CTGTGAGGTCCAGGGCTGGAGCCACCGGGACCTTTAGGGATCAGGCGATT
GTGGCCTGCCAAGGAGGCTTCTTGCCTTCTCTGCATGATGCTGGTCAAGG
CAGATAATAGATATGCTTCTGCCAATAGAAGACCAGAAGCTGTTGAGCGC
ACATTCCAGCAGAGGTTGGAACCAGGGCCAGCTGTCACTTCAGCCCAGTT
TTCTCTTTAATTTCTTTCTTATGGACAATCCTGCCAGGAAATCTCTTTGG
CATGGCTGCCTCTTTTTGATTCTTCACTGACAGCTTCTGTGTGGTAGCCT
AAAGGCCAAGGACAGGCCACAGTGCCACATGGGGTTTCATAGGCTGTGGC
TTATGGTCTGCCATCAGCTGTTGACCACAGTGAATCCTGTGAAGGAGAGA
GTGATTCTGCCTACGGTTCCTCTGTAGACCGTGTTCTGCCTATTATTCAG
ACCTCTGTGGCTTTGATAAATGGCGTTGTACTTGTTGATATGCTCATTTG
GTCTCTAGTTGCTAGCTCAAATTTATCCCCTGTCCCCTCCTTTCCTTAGA
TCCCTATGGTTACCCCGTTTTGTACTTTTCTTCGTCGGTCTCTTTTCCTT
TTG
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACACCCACGCCAGCATTTCCAGCC
CTGCAGTACCTGGAGTCCGTGGATGAAGGTGGGGTGGCATGGCAAGCCGG
ACTAAGGACCGGGGACTTCTTGATTGAGGTAGGGCACAGGTGTTTGTATC
ACACTACTTGGGGAGAGCGCCGACTCTCATGTGAGAGAGGATTGTGGTTT
TGAGCACAGCATCCGGATGGTGGATGACTTATGTCACATGGCTTGTATTC
TCTCGAGCATACCCTACTTTTCGAGGATGCTTTTCCTCTGTCCCGGATGT
TCTAGTGTTTTTCTGAGCTCTTTGCCAAGAGAAAGTCTACATGCACCCTT
GCCCATGTGGTCTTTTTTTACGCCCTATCTATATTTGTTCCTCGATTTTC
GCCTTCCCCTCTGTTTCTTTTGCTTCTCTGCTTCATTTTCCTTCCTCTTT
CATTTTTGCCTTTCTACTCCCTTTTCTCCCCTTTGTCCTTCTTCCTTCTC
GTCTCTTTTCCCCTTTTTTCTCCTCTCTCTTCCCTTTCTCCATTTTACTT
TCTGTTTTCCTTTTTTTTTCTCCTCCTTTCCCCCCTTCCCTTTTCTTCCC
TTCTTATTTTCCTTTTTATTTTCCCCTTTCTTCTTTTTTTTTCTTTTCTC
TTTTCCTCTTCCCTCCCATTCTTCTTTTTATTCTTTCCGTTTTCCCTTTC
GTTTTTATTCCTTTTTTCCTCCTTTCCCCTCTATTATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_e04.b1 MSMg01no467_e04.b1 CHROMAT_FILE:
MSMg01no467_e04.b1 PHD_FILE: MSMg01no467_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:04 2005
         (382 letters)



>mm_chr7_151644846_151645627
          Length = 782

 Score =  723 bits (374), Expect = 0.0
 Identities = 380/382 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagcctcattcagggtagcacatacctgtgaggtccagggctggagccaccgggaccttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 cagcctcattcagggtagcacatacctgtgaggtccagggctggagccaccgggaccttt 523

                                                                       
Query: 61  agggatcaggcgattgtggcctgccaaggaggcttcttgccttctctgcatgatgctggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 agggatcaggcgattgtggcctgccaaggaggcttcttgccttctctgcatgatgctggt 463

                                                                       
Query: 121 caaggcagataatagatatgcttctgccaatagaagaccagaagctgttgagcgcacatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 caaggcagataatagatatgcttctgccaatagaagaccagaagctgttgagcgcacatt 403

                                                                       
Query: 181 ccagcagaggttggaaccagggccagctgtcacttcagcccagttttctctttaatttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ccagcagaggttggaaccagggccagctgtcacttcagcccagttttctctttaatttct 343

                                                                       
Query: 241 ttcttatggacaatcctgccaggaaatctctttggcatggctgcctctttttgattcttc 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttctgatggacaatcctgccaggaaatctctttggcatggctgcctctttttgattcttc 283

                                                                       
Query: 301 actgacagcttctgtgtggtagcctaaaggccaaggacaggccacagtgccacatggggt 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 actgacagcttctgtgtgggagcctaaaggccaaggacaggccacagtgccacatggggt 223

                                 
Query: 361 ttcataggctgtggcttatggt 382
           ||||||||||||||||||||||
Sbjct: 222 ttcataggctgtggcttatggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no467_e04.g1 MSMg01no467_e04.g1 CHROMAT_FILE:
MSMg01no467_e04.g1 PHD_FILE: MSMg01no467_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:04 2005
         (256 letters)



>mm_chr7_151472370_151473025
          Length = 656

 Score =  451 bits (233), Expect = e-131
 Identities = 239/241 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacccacgccagcatttccagccctgcagtacctggagtccgtggatgaaggtggggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacccacgccagcatttccagccctgcagtacctggagtccgtggatgaaggtggggtg 260

                                                                       
Query: 61  gcatggcaagccggactaaggaccggggacttcttgattgaggtagggcacaggtgtttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatggcaagccggactaaggaccggggacttcttgattgaggtagggcacaggtgtttg 320

                                                                       
Query: 121 tatcacactacttggggagagcgccgactctcatgtgagagaggattgtggttttgagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatcacactacttggggagagcgccgactctcatgtgagagaggattgtggttttgagca 380

                                                                       
Query: 181 cagcatccggatggtggatgacttatgtcacatggcttgtattctctcgagcatacccta 240
           ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 381 cagcatccggatggtggatgacttaggccacatggcttgtattctctcgagcatacccta 440

            
Query: 241 c 241
           |
Sbjct: 441 c 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space:   159809
Effective search space used:   159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)