BAC Information

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BAC

Clone NameMSMg01-467K13
Chromosome7 (Build37)
Map Location 136,417,059 - 136,417,428
singlet/doubletsinglet
Overlap genePpapdc1a
Upstream geneBC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144
Downstream geneBrwd2, LOC100043150, Fgfr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467K13.T7 (MSMg01no467_k13.b1)MSMg01-467K13.TJ (MSMg01no467_k13.g1)
ACCAG551314AG551315
length739755
length of high quality
(start - end)
249 (66 - 314)468 (73 - 540)
definitionCHROMAT_FILE: MSMg01no467_k13.b1 PHD_FILE: MSMg01no467_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:36 2005CHROMAT_FILE: MSMg01no467_k13.g1 PHD_FILE: MSMg01no467_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCACCTGTTGCATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAA
CATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCAC
CTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATG
CTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATT
GCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAA
TTGGACATAGTACTTTTTTTAGGATCCAGCAATACCTCTCCTGGGCATAT
ATCCAGAAGATGCCCCAAATGGTAAGAAGGACACATGCTCCACTATGTTC
ATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCC
CTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGT
ACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGG
ATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAA
CTCACACAATATGTACACCCTGATAAGTGGATATTAGCCCCTATCCTTAT
TATACCCTAGATATTAGATACTATTTCCTAAACTCTTGAAACTCAGTAAA
AATGAAATATGAAGGGTGGGATCCTATGTCCCCTCCATA
ATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTTCCAGCAAACTATACAAGAAATATT
AAAGGAAATTCTTCAAGCATGAAAAATACAATCCCAGACAGAAAATCAAA
TCTGAAAGAAATAATGCAAAGTTTTGAAAAATGTAAATATTTACAAAAAA
TCAAGTAGATTAATTTTTGAAATCCAAGGGAAAGATTATTGGAATGTTTT
ATGGGACTTATAATTTAAAACAAAATCTAGGATAATTTATCAAAGGCTGA
AAAGAGAAAAGAAAGTATGATGTCATAGGTTTTTACATTGCACATGAAAT
GATGTGAGACTGACTTACAGATGATGCTGATTTTCAAAAATACACCCTGA
TCTCTAGAGAAACTAGTGAAATGTGTTTGAGCCGTATAAGTTTAAAATTA
AATAAGGGAGATCATGGAGAATATCAACAAATATTTGACAAACCTAANAG
ACAATAGTGAAAGAGGGGAAAAGGATAGATGGAATAAGTGAAACTCAAAT
GTAGATAATCAACTTAAACCTGCAACAGACATTATTGCACTAACTATAAA
TGGATTAAGGTTTCTAATTAATGACCGAGACTATTCCCATGAATAAAATT
TATAAAGCTCCATTCAGCGGTTATAAGAAAAAATTTTTATAATAAAAAAA
GAACCACCACCCTTTGTTTGAATTTTAAGGAAAAAAAAAACCCAACTTCT
TGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_k13.g1 MSMg01no467_k13.g1 CHROMAT_FILE:
MSMg01no467_k13.g1 PHD_FILE: MSMg01no467_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:36 2005
         (468 letters)



>mm_chr7_136417059_136417926
          Length = 868

 Score =  658 bits (340), Expect = 0.0
 Identities = 364/372 (97%), Gaps = 4/372 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttccagcaaactatacaagaaatattaaaggaaattcttcaagcatgaaaaatacaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 atttccagcaaactatacaagaaatattaaaggaaattcttcaagcatgaaaaatacaat 311

                                                                       
Query: 61  cccagacagaaaatcaaatctgaaagaaataa-tgcaaagttttgaaaaatgtaaatatt 119
           |||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||
Sbjct: 310 cccagacagaaaatcaaatctgaaagaaataact-caaagttttggaaaatgtaaatatt 252

                                                                       
Query: 120 tacaaaaaatcaagtagattaatttttgaaatccaagggaaagattattggaatgtttta 179
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tacaaaagatcaagtagattaatttttgaaatccaagggaaagattattggaatgtttta 192

                                                                       
Query: 180 tgggacttataatttaaaacaaaatctaggataatttatcaaaggctgaaaagagaaaag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tgggacttataatttaaaacaaaatctaggataatttatcaaaggctgaaaagagaaaag 132

                                                                       
Query: 240 aaagtatgatgtcataggtttttacattgcacatgaaatgatgtgagactgacttacaga 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 131 aaagtatgatgtcataggtttttacattgcacatgaaatgatgtgagactgacttatgga 72

                                                                       
Query: 300 tgatgctgattttcaaaaatacaccctgatctctagagaaactagtgaa-atgtgtttga 358
           |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 71  tgatgctgattttcaaaaatacaccctgatctctagagaaactagt-aatatgtgtttga 13

                       
Query: 359 gccgtataagtt 370
           ||||||||||||
Sbjct: 12  gccgtataagtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)