BAC Information

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BAC

Clone NameMSMg01-467L23
Chromosome7 (Build37)
Map Location 107,959,762 - 107,960,204
singlet/doubletsinglet
Overlap geneB930006L02Rik
Upstream geneNeu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, LOC100041204
Downstream geneTnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467L23.T7 (MSMg01no467_l23.b1)MSMg01-467L23.TJ (MSMg01no467_l23.g1)
ACCAG551382AG551383
length730741
length of high quality
(start - end)		273 (70 - 342)475 (76 - 550)
definitionCHROMAT_FILE: MSMg01no467_l23.b1 PHD_FILE: MSMg01no467_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:42 2005CHROMAT_FILE: MSMg01no467_l23.g1 PHD_FILE: MSMg01no467_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGGTGAATTACGATTGGGAGCTATTTCTGAGCAGGTAAGAGCAC
TGGTTGCTCTTCTAAAAACCAGAGTGCAGTTCCCAGCATCCACACTGTTG
GGTAACTCCAGCTCCAGGGGAATTTCACAGCTTCCAGCCTTCTTAGGCAC
CCTCACACATGTGGCAAACACTTATACAGACAGAGACACAGACACAGACA
CACAGACACACACAGACTAAAAATATTGTAAATATATATGCATAGAGTGT
GTAGTGTGTGAGTGAGTGTGTGTGTGTGTGTGTGTGTGNNNNNNNNNNNN
NNNNNNNNNTTTTTTTTNTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTNNTTTTNTNTTTTTTTTTTNTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTNTNTTTTTNTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTNTTNTTNTT
TTTTTTTTTTTTTNTTTNTTTTTTTTTTTTTTTTTTNTNTTNTTTTNTTT
TTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTNTTTTTTTTNTT
TTTTTTTTTTTTTTTTTTNTTTTTTNTNTNTTTTTNTTTTNTTTNNTTTN
TTTTTTTTTTNNTTTTTTTTTNTTTTTTTT

NCAAGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCTCTATAGAAATAATCAGAGTCT
GGGCTGGAGAGATGGCTTAGTGGTTACAAGCGCTACTCTACCAGCAGACC
TGGGTTCAGTTCCCAGCACCCACAGGCAGCTCACAACAATTCATAACTTC
AGGGGATCTGACATCCTCTTCTGGTCTCTGTGGGTACCAGGCACACACAT
GATGTGTAGACATATATGCAGACAAAACAACTATTTACATAAAAATAAAT
ATAATTTTGAAAAGGGGTGTTTCAAAGGTTTTGGTTTTAGGTTTTTGTTT
TGTTTTGTTTTCAGGTTTTAAAACGTTTTATTTGCAATTCTTCCCCTTCC
CCACCAGCCAGAGTGGCAGGCAGCCTTCACTGTTAGTGCTGCTTGGCTCT
CGGGTGTGAAGGCCTAGCACAGTCACTTAAACCTGACCCACCCTCTTTGC
TGCTCACAGAATTAAACAGCAAACAGAAGTAAAATCGGAGGCTGGAGAGA
TAGCACAGCAGATAAGAGCACTGGCTGTTCCCGAGGATGAGGGGAGCCCA
GGCTTATCCAGAACTCAAAAGCCTCTTTGCCATCCCCTGCTGGGGCCTGG
ACTTGGGAAAAACTCCCCCCGGCTTCTTTAAAGCTCCTTGGGCTAGCCCC
AAAGGTTCTTCACTTCCGGAAAAATTCTCTCCGGGGGGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_l23.g1 MSMg01no467_l23.g1 CHROMAT_FILE:
MSMg01no467_l23.g1 PHD_FILE: MSMg01no467_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:42 2005
         (475 letters)



>mm_chr7_107959333_107960207
          Length = 875

 Score =  849 bits (439), Expect = 0.0
 Identities = 442/443 (99%)
 Strand = Plus / Minus

                                                                       
Query: 33  agagatggcttagtggttacaagcgctactctaccagcagacctgggttcagttcccagc 92
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 agagatggcttagtggttacaagcgctactctaccagcagacctgggttcagttcccagc 813

                                                                       
Query: 93  acccacaggcagctcacaacaattcataacttcaggggatctgacatcctcttctggtct 152
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 acccacaggcagctcacaacaattcataacttcaggggatctgacatcctcttctggtct 753

                                                                       
Query: 153 ctgtgggtaccaggcacacacatgatgtgtagacatatatgcagacaaaacaactattta 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ctgtgggtaccaggcacacacatgatgtgtagacatatatgcagacaaaacaactattta 693

                                                                       
Query: 213 cataaaaataaatataattttgaaaaggggtgtttcaaaggttttggttttaggtttttg 272
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 cataaaaataaatataattttgaaaaggggtgtttcaaaggttttggttttaggtttttg 633

                                                                       
Query: 273 ttttgttttgttttcaggttttaaaacgttttatttgcaattcttccccttccccaccag 332
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ttttgttttgttttcaggttttaaaacgttttatttgcaattcttccccttccccaccag 573

                                                                       
Query: 333 ccagagtggcaggcagccttcactgttagtgctgcttggctctcgggtgtgaaggcctag 392
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 572 ccagagtggcaggcagccttcactgttagtgctgcttggctctcgagtgtgaaggcctag 513

                                                                       
Query: 393 cacagtcacttaaacctgacccaccctctttgctgctcacagaattaaacagcaaacaga 452
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cacagtcacttaaacctgacccaccctctttgctgctcacagaattaaacagcaaacaga 453

                                  
Query: 453 agtaaaatcggaggctggagaga 475
           |||||||||||||||||||||||
Sbjct: 452 agtaaaatcggaggctggagaga 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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