Query= MSMg01no467_n04.b1 MSMg01no467_n04.b1 CHROMAT_FILE:
MSMg01no467_n04.b1 PHD_FILE: MSMg01no467_n04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:48 2005
(219 letters)
>mm_chr7_91178953_91179571
Length = 619
Score = 366 bits (189), Expect = e-106
Identities = 207/219 (94%), Gaps = 10/219 (4%)
Strand = Plus / Minus
Query: 1 gacaacacagaagatgagtatcagggatgagtgtgtggggagagatccaggaagcaacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gacaacacagaagatgagtatcagggatgagtgtgtggggagagatccaggaagcaacct 293
Query: 61 actctgttcaggttagtgttcaggccatcaactgaaattgaaaacagaggagagagtttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 actctgttcaggttagtgttcaggccatcaactgaaattgaaaacagaggagagagtttg 233
Query: 121 gctcgtggggtgatgccctggactgggcaagatggctttagaggtttgagacacacagga 180
|||||||||||||||| ||||||||||||||| |||||||||||||||| |
Sbjct: 232 gctcgtggggtgatgctctggactgggcaaga----------ggtttgagacacacagaa 183
Query: 181 ggacgtggctggtaaccaggacaagtctagtgaaccagt 219
|||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ggacgtggctggtaaccaggacaagtctagtgaaccagt 144
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space: 128100
Effective search space used: 128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no467_n04.g1 MSMg01no467_n04.g1 CHROMAT_FILE:
MSMg01no467_n04.g1 PHD_FILE: MSMg01no467_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:48 2005
(426 letters)
>mm_chr7_91011323_91012148
Length = 826
Score = 812 bits (420), Expect = 0.0
Identities = 423/424 (99%)
Strand = Plus / Plus
Query: 1 aaaacagtacctaataggaaagctcttactatcgcaatgacccttcttgacctcggcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaacagtacctaataggaaagctcttactatcgcaatgacccttcttgacctcggcctc 260
Query: 61 tacacttaaaaggcaggaactgttttatcttgcttttctttgaacttttggccacagcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacacttaaaaggcaggaactgttttatcttgcttttctttgaacttttggccacagcct 320
Query: 121 tgttttccctgggcatcacccattagggagcttacatctctctcctatttgagtttcaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttttccctgggcatcacccattagggagcttacatctctctcctatttgagtttcaag 380
Query: 181 ttctccatctgtaaaacagggatgaaaataccttacagggttttaataaagcatggatgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctccatctgtaaaacagggatgaaaataccttacagggttttaataaagcatggatgg 440
Query: 241 ttttggaggtgctgcatacagagctattggcagtaatattgtcagcagcaatactcactt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttggaggtgctgcatacagagctattggcagtaatattgtcagcagcaatactcactt 500
Query: 301 gtaatcccaaagaaattgttcttcaccaaaaaaacaaaaacaaaaacaaaaactcttccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaatcccaaagaaattgttcttcaccaaaaaaacaaaaacaaaaacaaaaactcttccc 560
Query: 361 cagagccaggaatggtgtcaaacacctgtaacgctagcacttggaagagtagggatcagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagagccaggaatggtgtcaaacacctgtaacgctagcacttggaagagtagggatcagg 620
Query: 421 agtt 424
||||
Sbjct: 621 agtt 624
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space: 340689
Effective search space used: 340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
