BAC Information

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BAC

Clone NameMSMg01-467P12
Chromosome7 (Build37)
Map Location 14,138,860 - 14,139,217
singlet/doubletsinglet
Overlap genenone
Upstream gene2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243
Downstream gene9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627, EG434121, EG629203, LOC677512, EG629219, EG434123, 2810007J24Rik, EG638251
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467P12.T7 (MSMg01no467_p12.b1)MSMg01-467P12.TJ (MSMg01no467_p12.g1)
ACCAG551550AG551551
length732735
length of high quality
(start - end)		611 (43 - 653)513 (72 - 584)
definitionCHROMAT_FILE: MSMg01no467_p12.b1 PHD_FILE: MSMg01no467_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:59 2005CHROMAT_FILE: MSMg01no467_p12.g1 PHD_FILE: MSMg01no467_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAGGCCTATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAG
CCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCA
GGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACT
TGAAATATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATAC
AAATTGGAAAAGAGGAAGTCAAAATATCAGTTTTTGCAGATGATATGATA
GTATATATACGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGAT
AAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAA
TGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAATGAAATTAGGGAA
ACAACACCCTTCTCAATAGTCACAAATAATATAATATATCTTGGCGTGAC
TCTAACTAAGGAAGTGAAAGATCTGTATGAAAAAACTTCAAGTCTCTGAA
GAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCAT
GGCTTGGCAGGATCAACATTGTAAAAGTGGCTATCTTGCCAAAAGCAATC
TACAGATTCAATGCAATCCCTATCAAAATTCCAACTCAATTCTTCAACGA
ATTAGAAGGAGCAATTTGCAAATTCATCTGGN

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTACGAGATTATCTTTAGAATATATTTAA
AAGTTGTTGAATTTGGGCCATGCTTATCTTATTATCCTCTTTGTGTATCT
GTCTCTCTGTCTCCCTGCCTCTGTGCATGTGTGTGTGTGCACACATATGT
AAATGTTTTATATGCATGTGTGTTCAAGGGTGTGTGCTTGGTTGTATATT
ATGTGTAGATATCAACTTAGGATATTTTCAATTATCGCTCTCCATTTTAT
TTGGGGGATGAATATTATGTCTCCCACTGAACTTGAAGCTTACCATTATA
GCTAAGCTGGCTGGTCAGCAAGAACCAGGATCTGTTGACCCTACAACCAC
TCCTATCTTAGTAGGGTTCCCATTGTTGTGAAGAGATACCATGATCAAGG
CAACTATTATAAAGGACACTTAATTGGGGCTGGTTTAAAGGTTCTAAGGT
TCAGTCAGTCCATTATCATCGTAGCAGTGACAAGGCAGGCATGGTGCTGG
AGGAGCTGAAAGTTCTATATCTTGTTCTGAAGAANACCAGGAAAAGACTA
ACTTTGAGGCAGCTAGAAGAATGTTCTCTAAGCGCATCCCAGTAACACAC
TTCCTCCAACAAGGCCACATCTACTGCAACAAGGCCATACCTCCTAACAG
GGCCTTTCTCAGGGTCAGGTAATTCTCAAAACACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_p12.g1 MSMg01no467_p12.g1 CHROMAT_FILE:
MSMg01no467_p12.g1 PHD_FILE: MSMg01no467_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:59 2005
         (513 letters)



>mm_chr7_14138860_14139772
          Length = 913

 Score =  677 bits (350), Expect = 0.0
 Identities = 356/358 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttacgagattatctttagaatatatttaaaagttgttgaatttgggccatgcttatctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttacgagattatctttagaatatatttaaaagttgttgaatttgggccatgcttatctta 299

                                                                       
Query: 61  ttatcctctttgtgtatctgtctctctgtctccctgcctctgtgcatgtgtgtgtgtgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ttatcctctttgtgtatctgtctctctgtctccctgcctctgtgcatgtgtgtgtgtgca 239

                                                                       
Query: 121 cacatatgtaaatgttttatatgcatgtgtgttcaagggtgtgtgcttggttgtatatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 cacatatgtaaatgttttatatgcatgtgtgttcaagggtgtgtgcttggttgtatatta 179

                                                                       
Query: 181 tgtgtagatatcaacttaggatattttcaattatcgctctccattttatttgggggatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tgtgtagatatcaacttaggatattttcaattatcgctctccattttatttgggggatga 119

                                                                       
Query: 241 atattatgtctcccactgaacttgaagcttaccattatagctaagctggctggtcagcaa 300
           | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 agatgatgtctcccactgaacttgaagcttaccattatagctaagctggctggtcagcaa 59

                                                                     
Query: 301 gaaccaggatctgttgaccctacaaccactcctatcttagtagggttcccattgttgt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  gaaccaggatctgttgaccctacaaccactcctatcttagtagggttcccattgttgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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