BAC Information

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BAC

Clone NameMSMg01-468E22
Chromosome7 (Build37)
Map Location 116,806,297 - 116,806,695
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5
Downstream geneLOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368, Sbf2, LOC668246, Adm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468E22.T7 (MSMg01no468_e22.b1)MSMg01-468E22.TJ (MSMg01no468_e22.g1)
ACCAG551810AG551811
length857779
length of high quality
(start - end)
256 (51 - 306)400 (78 - 477)
definitionCHROMAT_FILE: MSMg01no468_e22.b1 PHD_FILE: MSMg01no468_e22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:28 2005CHROMAT_FILE: MSMg01no468_e22.g1 PHD_FILE: MSMg01no468_e22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTGAGTTTCCGCCAGCCTGGTCTACAGAGTGAGTTCCAG
GATAGCCAGGGATACACAGAGAAACCCTGTCTCAAAAAGAAAAGGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGG
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGGAAGGAAGG
AAGGAAGTATTCCTTTTCTTTTTTCCTCTCTCTTTTTTTTTTNCTGTTGG
TCTTCGTTTGTCTTCTTCTTCTTTTTTCCCCTTCCTTCCCTCTTTCCCTT
CTTTGTCTCCTTTTTTTTGTTTCTTTTCCCTCCCCCCTTTCCCCCCTTTC
TTTTTTTTTTGTCTTTCTTTTTTTTTCTTCTTTTTCCTCTTTTTTCTCTT
TGTTTCTTTCTTTTTCTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTT
TCCCTTTTCTTTTCTCCCTCTCATTTTTTCTTTCTTTTTCTTTCTCGTAT
TTCTACTTCTTCTTCTCCTCCTTTTTTTTTCTCCCCTTTTTTCTGCTTTA
TTTCTTTTTTTTTTCTACTCTTTTTTTTCTCTTCTTTCATTCTTCGATTC
TCTTCTCTCTATTTTTAATCATACCTTTCCTTTCTTTCTTTTTCTCTGTT
TCTCCTTTTTTTAGTTTCCATTTTATTTTCTTTTATTCTCGTTCTCTTTT
TTTTCTTTTTATTTTTGTCTTTCCTCTCTTTTTCTCTTCTTCCTCTCTCC
TTTATTT
NNCCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACTAGGCTGGCCTC
GAACTCAGAAATCCGCCCACCTCTCCTTCTGCCTCTGTCTCCCAAGTGCT
GGGATTCGAGGTACACACTTTCATGCCCAGCGTGATACAGTTAACATTTT
TATATTTGGTGAGCATGTGTCAGTTTTATTACTTATTCGAGGAGTGATTT
AAGTTTTCTGAAAAATAGGGCTGGACTGTCCTTTTGATGTAAAACCACTT
GCTCTCAGGTGATTTCCTAGCCTCCCTGTTTAGGGCTAAGGTTTCCAGAC
TGGCAGATAGATTATCTCCTTGAAATTAGCTAGTTTTTTTTATTTTCACA
CTTCTCCCATCCCTCTCCTATGCACAGATGGCCATCACCAGATGTAACAT
TGTACCTGTCCCTTCTCTGTCGCTCTCTGGGTACACAAGCTGAGGGAGCA
CTATGTTTTTGCCTTTGTGAGGTAAACCCAGGATTATGTAATACACCTGT
GACTTTGGGTTTTTGGTTTATACCAACCCTAATCAAAAGGTGCGCATGAT
TACATCTTTTTCTTGTGAAGGGGCTTCTTGAATACAACTCCCCCTCCTTC
TTTCTCAAAACTCATTTTATTTCTTTTCCTCTTTCCAGAGTTTTTTATCA
AATATCACATTCTATACTTTTTTCCCTAGCTTTCATACTTCCTCTCTACT
ATCTTTTTCTCTATCAGTTCTTCCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_e22.g1 MSMg01no468_e22.g1 CHROMAT_FILE:
MSMg01no468_e22.g1 PHD_FILE: MSMg01no468_e22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:28 2005
         (400 letters)



>mm_chr7_116805993_116806791
          Length = 799

 Score =  735 bits (380), Expect = 0.0
 Identities = 395/400 (98%), Gaps = 1/400 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtagactaggctggcctcgaactcagaaatccgcccacctctccttctgcctctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 actctgtagactaggctggcctcgaactcagaaatccgcccacctctccttctgcctctg 644

                                                                       
Query: 61  tctcccaagtgctgggattcgaggtacacactttcatgcccagcgtgatacagttaacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tctcccaagtgctgggattcgaggtacacactttcatgcccagcgtgatacagttaacat 584

                                                                       
Query: 121 ttttatatttggtgagcatgtgtcagttttattacttattcgaggagtgatttaagtttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ttttatatttggtgagcatgtgtcagttttattacttattcgaggagtgatttaagtttt 524

                                                                       
Query: 181 ctgaaaaatagggctggactgtccttttgatgtaaaaccacttgctctcaggtgatttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ctgaaaaatagggctggactgtccttttgatgtaaaaccacttgctctcaggtgatttcc 464

                                                                       
Query: 241 tagcctccctgtttagggctaaggtttccagactggcagatagattatctccttgaaatt 300
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tagcctccctgggcagggctaaggtttccagactggcagatagattatctccttgaaatt 404

                                                                       
Query: 301 agctagttttttttattttcacacttctcccatccctctcctatgcacagatggccatca 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 agctag-tttttttattttcacacttctcccatccctctcctatgcacagatggccatca 345

                                                   
Query: 361 ccagatgtaacattgtacctgtcccttctctgtcgctctc 400
           ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 344 ccagatgtaacattgtacccgtcccttctctgtcgctctc 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 799
Length adjustment: 9
Effective length of query: 391
Effective length of database: 790
Effective search space:   308890
Effective search space used:   308890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)