BAC Information

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BAC

Clone NameMSMg01-468F02
Chromosome7 (Build37)
Map Location 105,932,314 - 105,932,716
singlet/doubletsinglet
Overlap genenone
Upstream genePak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir
Downstream geneWnt11, LOC666978, Uvrag, EG666529, Dgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1, Olfr520, Olfr521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468F02.T7 (MSMg01no468_f02.b1)MSMg01-468F02.TJ (MSMg01no468_f02.g1)
ACCAG551818AG551819
length794855
length of high quality
(start - end)
410 (45 - 454)49 (72 - 120)
definitionCHROMAT_FILE: MSMg01no468_f02.b1 PHD_FILE: MSMg01no468_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:29 2005CHROMAT_FILE: MSMg01no468_f02.g1 PHD_FILE: MSMg01no468_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTTATAAATTGCGGTCGTTATACGACTCACTATATTCCGAGGATCCGC
GGAATTCACACATTTCTTTTCATCCAAATGCTTTATTTACTTCAACCAGG
ATTTCTGTTTGCACCAGAGATTTCTGACTTTCAAAATGATACTGGCCTAG
AGAAGAGAAGTCATTCTTGAAGTATTTCCCAAAGCCAATTATGAACTTCC
CGGGGTGCCAGCCCACTCCATTGTTCTCAGACATTGTATAAAGGCCATTC
CCCACAACAAGCTGTGAACCTCTGAGCCAACGTGTCAACTTCTGAACAAT
CCGGGCGTTCCCCAGTCCTGGCTGGATATTAGCCAAGGGCTGGATATCAG
CCAGCCTCGAGAGTTGCTCAATGCTCTCCCTGGAGGGGGCTTGCTGGATG
GGAGGGATTTTCCAGCGTGACTTGGATGAACCTAGAGCTATTTCCCCACT
GAGCAGCCCCAGTCTGAGAGGCACCAGCAGCCTTAGTCGAGGTGCAGTGG
GGACAGAACTGGGATGTGGGTGACTCAGTCTATGGATGTCTGGCTCGTTG
CTGTGTTCCTCACAAGTTTCTGCACAATTTTACGCCTATCTTCAACTATG
AAAACCCCCCTGATAAACTCCTAATTGTCATACAGTGTATCTGGCACCTG
TATTCCCAGTTATTCCTATGTTTGTCCCCCCGACTTCATCTATCTGAACC
GAAGACCTCTTGTTTCCTATTTTCTATTCCCCCGCTCTCTTTTTCACCTT
TGATCTCGTTCTTCCCCTCCTCCTTCTCTTATAATTTCCTTTTA
ACAATACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGAAATCATCCCTCTATTATTTGTGAGAAATGCTT
CTCAAGGCAGTTGTGCATAGTCCCGATGTGTATGTGTGTGTGTGTGTGTG
TGTCTAACAACCACCCCACAACCCAACCCAACCAACCAAAAACACCCCCC
CCCCTCCCCCCCATCACCCTCACCACCCCAACCCCCACAACATCATCCCC
CCCCCAACTTATAAACAACACAACCTCCCACACCCCCCCAACACAACAAC
CCCCCACCCCCCCCCCACCACCATTTTTCTCCCCCCCACCATCACCACCC
CCCATACCCCCACCACTCACCACCCCACCACATCCCCAAACCCAACCAAC
ACCACCCATCACCCCAAAAAAACTCCCCCCCCACCATCCACCCATCCCAA
CACAACCCCCCCCCCACCCCCCCACACCCCAACCCCCAATCAAAAACCAC
CACCCACCCATCCACCCTACCCCTTACAAAACCCCCACCAACATCCTACA
CCTCCCCCCCCCCCCTCCCCACCCACCCCCCTCAACACCAACACCCTCCA
CAAACATACCCCCCCACTAAACCCCAACCCCACCCCCAACCCATCCACCC
ACCCACACAAACCCCTAATTACACCTCCCACACCCACCTCAATACCTAAA
ACCACAACCCCCCCAAACAAAACAACACCAACCCACACACAACATTCACA
CCCACATCACACAATCTCCCAACCAACCCCATAAACCAATCTCACCACCC
ATCTACCACCCCTATTCACACCACCCACCCTCTCCCACCACCCTCTAAAC
ACCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_f02.b1 MSMg01no468_f02.b1 CHROMAT_FILE:
MSMg01no468_f02.b1 PHD_FILE: MSMg01no468_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:29 2005
         (410 letters)



>mm_chr7_105932107_105932916
          Length = 810

 Score =  748 bits (387), Expect = 0.0
 Identities = 399/403 (99%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcacacatttcttttcatccaaatgctttatttacttcaaccaggatttctgtttg 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcacacatttcttttcatccaaatgctttatttacttcaaccaggatttctgtttg 267

                                                                       
Query: 68  caccagagatttctgactttcaaaatgatactggcctagagaagagaagtcattcttgaa 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 caccagagatttctgactttcaaaatgatactggcctagagaagagaagtcattcttgaa 327

                                                                       
Query: 128 gtatttcccaaagccaattatgaacttcccggggtgccagcccactccattgttctcaga 187
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gtgtttcccaaagccaattatgaacttcccggggtgccagcccactccattgttctcaga 387

                                                                       
Query: 188 cattgtataaaggccattccccacaacaagctgtgaacctctgagccaacgtgtcaactt 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cattgtataaaggccattccccacaacaagctgtgaacctctgagccaacgtgtcaactt 447

                                                                       
Query: 248 ctgaacaatccgggcgttccccagtcctggctggatattagccaagggctggatatcagc 307
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ctgaacaatccggtcattccccagtcctggctggatattagccaagggctggatatcagc 507

                                                                       
Query: 308 cagcctcgagagttgctcaatgctctccctggagggggcttgctggatgggagggatttt 367
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cagcctcgagagttgctcaacgctctccctggagggggcttgctggatgggagggatttt 567

                                                      
Query: 368 ccagcgtgacttggatgaacctagagctatttccccactgagc 410
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ccagcgtgacttggatgaacctagagctatttccccactgagc 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)