BAC Information

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BAC

Clone NameMSMg01-468N09
Chromosome7 (Build37)
Map Location 150,790,285 - 150,790,682
singlet/doubletsinglet
Overlap genenone
Upstream geneIgf2, Igf2as, Ins2, EG640264, EG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5, Kcnq1, Cdkn1c, Slc22a18, Phlda2, Nap1l4, Cars
Downstream geneTnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5, Mrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498, Shank2, Cttn, Ppfia1, Fadd, Tmem16a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468N09.T7 (MSMg01no468_n09.b1)MSMg01-468N09.TJ (MSMg01no468_n09.g1)
ACCAG552214AG552215
length909800
length of high quality
(start - end)
157 (77 - 233)427 (74 - 500)
definitionCHROMAT_FILE: MSMg01no468_n09.b1 PHD_FILE: MSMg01no468_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:12 2005CHROMAT_FILE: MSMg01no468_n09.g1 PHD_FILE: MSMg01no468_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXGATCCAGAACACCGCGGAA
TTCACTGTAGCTTTCGATACCTCAGCAAGATCAAGGCAATAGCATCAGTC
AACAGTCTAACAAGTGGTTCTCACAGAACTCTAAAGTGAAAGAGAGAGGA
GAAATAGAGAGAGACAGAGACAGAGAGAATGAAAGAAGAAAGAGATATAT
TGGAGGTTATTAGAGGGGAAATGGGAAGAGAAAGTTCCCTGTTTCTTTCC
CGTTTTTTTTTTTCCCTCCTGCCACTTTCCCCATCTCTAAGCGCTACCCC
TACCCACCACCCCCCCCTTTTTTTTTTATACACACCGCCGCACCCCCGCC
CTGGCGTCTTTTTTCCCTTCTCCTCTTTGTTCCCCCTCCTTCTGTTTTTC
CCTCCCTCTCTTTATTCCTACCCCCTTTCCCTCTCCTTCACTCCACTCCC
CTCTTTTTTTCTTTTTCTTCCTTCCGCCTCCACCTTCCCCTTTCCTTCCA
CTCTTCTTTTCCTATTTTTTTTCTTGGACTTACACCTTGATTTCCCTCCT
TATTTCCTTCTCCCCCCCTCCCCCCACCTTTTTTTCTCTTCTTCTCTGTC
TTCTTCTCTCTTTCTTCTCCCACTATTCTTTTTCCCCTATAATCTTCTCT
TTTTATCTCCTCACTTTATCTACTCTTTCTTTCCTACTCTCGCTCATTTC
TCTTGTTCCTTTCCCTTATATTATTCCTCTCCCTTTTACGCTCTGTCTGT
CTTACTGTCTTCTTATTCTCCTCTTTATCTCCTTCTCCTCATTCTCGTCT
CCCTTTCACGTTCNCCATTCCTCACCTTCACATTTACTCTCCTCTACTAC
CACTATTTTTCTCACGCCCTCTCTTCCTTTTTTCTCTCCTATCTTACCTC
CTTACTTCN
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGGTTGAAAAGAGACCAGCACACCAA
TGAGAGCAAAACTTTACTTCTGACCATAGGGCACACAGAGGCAGAACAGC
AAGCAAGCATACAGGGATAGAAAGTTTACTCAGTTCTTATTTTAACACAG
GTGGTGATTGTGACTTTTCCCCATTGTCTGCGGTTTTTTAAGGTGCACAG
GTAGGTCTATAGAGTTGACTCACGGCTTGAGAAGTTGAGAGCACTTGTTG
CTCTTGCACAGGACCTGGGTTCTTTTCTTGCACTAGGGGATCTGATGCCC
TCTTCTGACCTCTGTTGTACTGGGCATACTTATGGTATATGTGTATACAA
GCAGGCAAAACATTTGTACTGGCTAGTTTTGTGTCAGCTTGACACAGCTG
GAGTTATCACAGAGAAAGGAGCTTCATTTGAGGAAATGCCTCCATGAGAT
CCAGCTGTAAGGCCTTTTCTCCATTAGCGATCAAGGGGGAAAGGCTCCTT
GTGGCCGTAATCATCTCTGGGATGGCAGTCTTGTTCCTAAAAGACATACC
GCTCACCTACCCTTTGTAACTTAGCCTTTCACAGCTCCTCCTCTGGAATA
ACTCCCGCCTTCCTGATTTTTTTTTATCTCCAGACCAGTATCCCCTCTCT
ATAATAAATCATCCCTTTTTATCTCTTCTCTTCCACTCGTCCTCACTCCC
CCACCATATCATGCTTATACCCGCACTAACTCTTTACCACTTCTCCTACN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_n09.g1 MSMg01no468_n09.g1 CHROMAT_FILE:
MSMg01no468_n09.g1 PHD_FILE: MSMg01no468_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:12 2005
         (427 letters)



>mm_chr7_150790285_150791111
          Length = 827

 Score =  669 bits (346), Expect = 0.0
 Identities = 385/400 (96%), Gaps = 6/400 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggttgaaaagagaccagcacaccaatgagagcaaaactttacttctgaccatagggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 agggttgaaaagagaccagcacaccaatgagagcaaaactttacttctgaccatagggca 339

                                                                       
Query: 61  cacagaggcagaacagcaagcaagcatacagggatagaaagtttactcagttcttatttt 120
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 338 cacaggggcagaacagcaagcaagcatacagggatagaaagtttactcagttcttattct 279

                                                                       
Query: 121 aacacaggtggtgattgtgacttttccccattgtctgcggttttttaaggtgcacaggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aacacaggtggtgattgtgacttttccccattgtctgcggttttttaaggtgcacaggta 219

                                                                       
Query: 181 ggtctatagagttgactcacggcttgagaagttgagagcacttgttgctcttgcacagga 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gggctatagagttgactcacggcttgagaagttgagagcacttgttgctcttgcacagga 159

                                                                       
Query: 241 cctgggttc---ttttcttgcactaggggatctgatgccctcttctgacctctgttgtac 297
           |||||||||     | |  ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 158 cctgggttcaag--tcccagcactaggggatctgatgccctcttctgacctctgttatac 101

                                                                       
Query: 298 tgggcatacttatggtatatgtgtatacaagcaggcaaaacatttgtactggctagtttt 357
           |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 tgggcatacttatgatatacgtgtatacaagcaggcaaaacatttgtactggctagtttt 41

                                                   
Query: 358 gtgtcagcttgacac-agctggagttatcacagagaaagg 396
           ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 40  gtgtcagcttgacacaagctggagttatcacagagaaagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)