BAC Information

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BAC

Clone NameMSMg01-468N17
Chromosome7 (Build37)
Map Location 28,170,338 - 28,170,660
singlet/doubletsinglet
Overlap geneSpnb4
Upstream geneNlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1
Downstream geneBlvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468N17.T7 (MSMg01no468_n17.b1)MSMg01-468N17.TJ (MSMg01no468_n17.g1)
ACCAG552230AG552231
length817768
length of high quality
(start - end)		288 (74 - 361)406 (85 - 490)
definitionCHROMAT_FILE: MSMg01no468_n17.b1 PHD_FILE: MSMg01no468_n17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:14 2005CHROMAT_FILE: MSMg01no468_n17.g1 PHD_FILE: MSMg01no468_n17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGGGCATGGTCCCTCCTTCANNNNNNGNNNCACTATATCGAGAGGATC
CGCGGAATTCCAGGGCTTGCCGGGTATGTGCCCTACACCGTTAATTACTG
TACTAAGGAGTCAAAGGCAGGCAGATCTCTGTGAGTTCAAGGCCAGCCTG
ATCTACAAAGTGAGTTCTGGGACAGCCAGGGCTATTACACAGAAACCATG
TCTTGAAAAACAACAAAAGCCGGGCGTGGTGGAGCACACCTATAATCCCA
GCGCTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGG
TCTACAGAGTGAGTTCCAGGACAGCCAGTGTCTATACTGAGAAACCCTGT
CTCGAAAAACAAACAAACCAACCACAAGAAAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGATATATACTTGTTTGATT
CTGTGTTCTTTTCTTTTCTTTATTTCCTTTTTTGTTTTTACTTTTCCTTT
CTTTTTTATCTATTATTTATCTTCCTTCCCCCACCTTCCTTTTTCCTCTT
TCTTACTACTAAACCTCTACCCATTCTTTCTTTGTCTCCTTTTCTTGAGT
TTCGTACATGTATTCACCCATTCTTTTATATTTCTTCTTCTTACTTCCTT
TTCTCTTATCCCTCCTTCCTCACTCCTTCCATTTTTTGCTTTTTTGCTTC
TTTATTGTGCTCTTTCCTATCACCTATTTTTTATTCTTCTTCCGATCACT
ACATCTTCTTTTCTTTCTTCATCACTTTACCCCTTTATATCTCTCGTTCC
GCTTTCTACTTTTATCT

NTTTCACCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAACGCCAGCATTGCC
ACACTTAGGTTCTGCAGTGGTGGTCCCAGGTGTGCGTTTGTGCACCTTCC
CCTTAACTAACAAGCTGCCTCATGTCTTTGTTGGCCATGCCTGTTGTCAT
ATGACCTGGTAGGGTGGTGGCACACACCTGCAATCCCAGCACTTAGGACA
TAAAGACAGGGGTCAGAAGGTCAAGACCATCCTTGGCTATGTAGGAAGTG
GACCCCAGCCTGGGCTACATGAGACCCTATCTTAAACAACACCAAAACAA
AACAAAATCAGAGACAGGCCAGGTGTAGTGGTGCACACCTTTAATCCCAG
CACTCAGGAGGAAGAGGCAGTGGGTTCGAGGCTAGCCTGGTCTACAGAGA
AAATTCCAGGACAGCTTGGGGATATACAGTAAGATCCCGTCTAAGAGAAA
GGAAGGAAGTAAGGAAGGGAAGGGAAGGGAAGGATGACNTATCCTACAAT
GCCCTGTATCCTCTTCTTTTATCTCAATTGTTATCTCCTTCTCTTAATTT
CTTTTCTTTCCATCTAATATATGTATTTTTTATTATATTTTCCTTTTTTT
CTTTTATTTCTTTTACTTCTTTTTTTTTTCTATACTTTTTCTTCCTATTC
CTTTTATCCTTTTTTCTATTCCCATACTCTTTCTATCTTCATCCTTCTAT
ATATTCTCTCTTCTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_n17.g1 MSMg01no468_n17.g1 CHROMAT_FILE:
MSMg01no468_n17.g1 PHD_FILE: MSMg01no468_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:14 2005
         (406 letters)



>mm_chr7_28170334_28171139
          Length = 806

 Score =  594 bits (307), Expect = e-174
 Identities = 319/323 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacgccagcattgccacacttaggttctgcagtggtggtcccaggtgtgcgtttgtgca 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 327 caacgccagcattgccacacttaggttctgcagtggtgggcccaggtgtgcgtttgtgca 268

                                                                       
Query: 61  ccttccccttaactaacaagctgcctcatgtctttgttggccatgcctgttgtcatatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ccttccccttaactaacaagctgcctcatgtctttgttggccatgcctgttgtcatatga 208

                                                                       
Query: 121 cctggtagggtggtggcacacacctgcaatcccagcacttaggacataaagacaggggtc 180
           | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 cttggtaaggtggtggcacacacctgcaatcccagcacttaggacataaagacaggggtc 148

                                                                       
Query: 181 agaaggtcaagaccatccttggctatgtaggaagtggaccccagcctgggctacatgaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 agaaggtcaagaccatccttggctatgtaggaagtggaccccagcctgggctacatgaga 88

                                                                       
Query: 241 ccctatcttaaacaacaccaaaacaaaacaaaatcagagacaggccaggtgtagtggtgc 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  ccctatctcaaacaacaccaaaacaaaacaaaatcagagacaggccaggtgtagtggtgc 28

                                  
Query: 301 acacctttaatcccagcactcag 323
           |||||||||||||||||||||||
Sbjct: 27  acacctttaatcccagcactcag 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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