Query= MSMg01no469_g23.b1 MSMg01no469_g23.b1 CHROMAT_FILE:
MSMg01no469_g23.b1 PHD_FILE: MSMg01no469_g23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:01 2005
(493 letters)
>mm_chr7_78183349_78184244
Length = 896
Score = 888 bits (459), Expect = 0.0
Identities = 486/497 (97%), Gaps = 5/497 (1%)
Strand = Plus / Minus
Query: 1 gctcagaacctggaggctgtggtcagcctaacttgcttcatgtg----acttgtacaact 56
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 623 gctcagaacctggaggctgtggtcagcctaacttgtttcatgtgacttacttgtacaact 564
Query: 57 cacagccagtctccacccaccttaccataataaggctactaatattgtaaggcgtctaag 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cacagccagtctccacccaccttaccataataaggctactaatattgtaaggcgtctaag 504
Query: 117 ccataactcttctggctgtctttctattagctatagacttgccccctcgggaactgtagc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ccataactcttctggctgtctttctattagctatagacttgccccctcgggaactgtagc 444
Query: 177 cagcaaggggccatttgactgagaactctccagatttccttctgtgcaccggtgtggtca 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cagcaaggggccatttgactgagaactctccagatttccttctgtgcaccggtgtggtca 384
Query: 237 tgggcatgtttttgtcttattctctgtaaaccaagtctgctatatgcagttccgtgcttt 296
|||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 383 tgggcatgtttttg-ccaattctctgtaaaccaagtctgctatgtgcagttccgtgcttt 325
Query: 297 tctccctgtccctttggtcccctttcctcattcctgtgggctgctctaacacagttgcag 356
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctccctgtcccctcggtcccctttcctcattcctgtgggctgctctaacacagttgcag 265
Query: 357 aactggtcgtccaggtttgacagcatagtctggagttttgctgtagagaagtgctgtgaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aactggtcgtccaggtttgacagcatagtctggagttttgctgtagagaagtgctgtgaa 205
Query: 417 aaatggccatcattggcaagagaggccccttgctctagcaaactttatatgccccaatac 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aaatggccatcattggcaagagaggccccttgctctagcaaactttatatgccccaatac 145
Query: 477 agggaaaagccagggcc 493
|||||||||||||||||
Sbjct: 144 agggaaaagccagggcc 128
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 896
Length adjustment: 10
Effective length of query: 483
Effective length of database: 886
Effective search space: 427938
Effective search space used: 427938
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_g23.g1 MSMg01no469_g23.g1 CHROMAT_FILE:
MSMg01no469_g23.g1 PHD_FILE: MSMg01no469_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:01 2005
(469 letters)
>mm_chr7_78019001_78019868
Length = 868
Score = 845 bits (437), Expect = 0.0
Identities = 461/471 (97%), Gaps = 5/471 (1%)
Strand = Plus / Plus
Query: 1 attcaatcaggcagaagggagcttcagcttgtaagccaataaaactgacatcagggacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcaatcaggcagaagggagcttcagcttgtaagccaataaaactgacatcagggacca 260
Query: 61 gagcctgtcagagggtgctcacagggcttcagtacctaggtagattttctgaaccagtgt 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 gagcctgtcagagggtgctcacagggcttcagtacctaggtggattttctgaaccagtgt 320
Query: 121 gagcagccatctatcaacttggggtttatggggtttctgagatagtttccacttcttcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcagccatctatcaacttggggtttatggggtttctgagatagtttccacttcttcag 380
Query: 181 aggccatgggacttctaggctccatgtagtagatacagatggtgcagtaggtaagtgtca 240
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 aggccatgggactcctaggctccatgtagtagatacagatggtgaagtaggtaagtgtca 440
Query: 241 gatggcaaact--ctttatgtgtgcttgtcacctcttctttcccagaagtcccttgcccg 298
|||||||||| | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatggcaaaccagc---atgtgtccttgtcacctcttctttcccagaagtcccttgcccg 497
Query: 299 agtctctccttgaagccagcagaggctcaggtgcctggctgtctgccttctgtctggagt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agtctctccttgaagccagcagaggctcaggtgcctggctgtctgccttctgtctggagt 557
Query: 359 tctcgttgacattgctgcttatgcaccctgccctggggattatgagaaatcacaggcaac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tctcgttgacattgctgcttatgcaccctgccctggggattatgagaaatcacaggcaac 617
Query: 419 agaaagccttggaggtgcaccactcagggatcctggctcagaatcctgttt 469
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 agaaagccttggaggtgcaccactcagggatcctggctcagaatcctgttt 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 868
Length adjustment: 10
Effective length of query: 459
Effective length of database: 858
Effective search space: 393822
Effective search space used: 393822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
