BAC Information

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BAC

Clone NameMSMg01-469H08
Chromosome7 (Build37)
Map Location 135,575,811 - 135,575,999
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643
Downstream geneTial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144, Ppapdc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469H08.T7 (MSMg01no469_h08.b1)MSMg01-469H08.TJ (MSMg01no469_h08.g1)
ACCAG552690AG552691
length771802
length of high quality
(start - end)
191 (132 - 322)245 (79 - 323)
definitionCHROMAT_FILE: MSMg01no469_h08.b1 PHD_FILE: MSMg01no469_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:03 2005CHROMAT_FILE: MSMg01no469_h08.g1 PHD_FILE: MSMg01no469_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTTAAAATTTGCTTTCGANAAAAGAAGCATATTTCAAAACGCAGCGNG
GAANTCNCTGGCTATCTCAAACGCATCTATCTGAAAGTCTATCCATTAGC
CAGTTTCACCCCCTTTCTTCTCACCACGAGCCCTCTAGGTATTTTAAATG
TGATAACCTTAATTAATAATGTAAACAAAGTCATATTGCTTGTCTCCAGC
TCACTTCATTTAGCAAAATGTCTTCTTAATGCTTCCCCTATGCTGTGGAA
GCTGACAGCTTCATTTCCTCCCTCCAGTCTTCGTTTCCATGTCTTCTTTT
CCCTCCTTTTCCACTCTTATTTTTTTTGGTCAACATGACTTGGCTGCCAA
GCTAATACCCCTTCTGAGCCCTGTGATTACAGGCGCACATCCATCTACCT
CCATTTCAACCCAAAAACGCCCAATATTGTGCTGTGTATAGACCCCAGTT
TGTTTCCATTCATCTTTGCGTGTGAGTATTTATTTCTCCTCCTCCTCTGC
CAATTGCCAATATTGCTGCTACTAATTGAGACACGCCAACCCCGCAAAAC
TTGTTTTCACTTCCCCCGTTTAAACACCCACAATTGTATCCAGAGCCTCC
CGCTTCCCTTCATTCTTTGTCTTTTTACAACCTCTCTATCCCGCCTTTTC
AACTTTTTTCCAATATCTCATATTTTCTTTGACCCTTTCCTCAATTAACT
TCCATTTTTTCCATATACTCCCTCCTTTTGCCCCTTTTATTCCATTCCAC
CTTTTCTGTCTTATTTTCTTT
CTCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTGAATCAGGTTGTAAGGC
CTAGAGGCAGGCTCCTATGCCACAATATTTTTAAAAAGATGTATTTCGGG
CGGAGAAGGGGAGAGGACAGAGAGACGGTTCCGTAGTTGAAAGCATTAAC
TGCTTTTAAAAAGGACCTGGGTTCAGTTCTCAGAACACACGTAGTGGTTT
ACAACCATCTGCAACTCCAGTTTCAGAGGATCCAGAACCCGCTCCTGGCC
TCTATGGGCACTAGACATGCATACTTTTTTTATATATACATGTAGGAAAA
ACACTCTGACACATATAATAAAAATAAATACATATTTATAAAGAAAAAAG
AGACTTATTTGGGGCCTGGATGTGGTGACTCATGCCTTTAAATCCAATGC
TTGGGAGACAGGGCCAGGAAGATCTTCATGAGTTCAAGGCCAGCCACAGA
CACTCCGTGAGAAATCCTGTCTCATGGGCCTGTTTTGCTCAGACCACACT
CCCCCGCGTTTTACTTTGGCCCCGGGCCCGTTGATATTGTTCTCCCTTAC
CTTATCTCTGCTACCTGTCCGCATGTCTTTATTTACCCCCCCCCTACTCT
GCCCTGTTTTTTTCCCCCCCTTCCTATCTTCCTTCTCTCTCCTATTTTCT
CTCTATATTATTCCCCCCTACGTTTATTCTTACTCCCATCTTGCTCTCCT
CTCGCTTTTCCCTCTTTCTTTCTGTCGCTCTTTTCTCCCTCCCCTCCTCC
CG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_h08.b1 MSMg01no469_h08.b1 CHROMAT_FILE:
MSMg01no469_h08.b1 PHD_FILE: MSMg01no469_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:03 2005
         (191 letters)



>mm_chr7_135575611_135576201
          Length = 591

 Score =  350 bits (181), Expect = e-101
 Identities = 187/189 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctctaggtattttaaatgtgataaccttaattaataatgtaaacaaagtcatattgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctctaggtattttaaatgtgataaccttaattaataatgtaaacaaagtcatattgctt 260

                                                                       
Query: 61  gtctccagctcacttcatttagcaaaatgtcttcttaatgcttcccctatgctgtggaag 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 gtctccagctcacttcatttagcaaaatgtcttcttaatggttcccctatgctgtggaag 320

                                                                       
Query: 121 ctgacagcttcatttcctccctccagtcttcgtttccatgtcttcttttccctccttttc 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 ctgacagcttcatttcctccctccagtctttgtttccatgtcttcttttccctccttttc 380

                    
Query: 181 cactcttat 189
           |||||||||
Sbjct: 381 cactcttat 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)