BAC Information

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BAC

Clone NameMSMg01-470G19
Chromosome7 (Build37)
Map Location 135,278,377 - 135,278,482
singlet/doubletsinglet
Overlap geneItgax
Upstream geneSpn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam
Downstream geneItgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470G19.T7 (MSMg01no470_g19.b1)MSMg01-470G19.TJ (MSMg01no470_g19.g1)
ACCAG553430AG553431
length754782
length of high quality
(start - end)
106 (201 - 306)308 (71 - 378)
definitionCHROMAT_FILE: MSMg01no470_g19.b1 PHD_FILE: MSMg01no470_g19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:19 2005CHROMAT_FILE: MSMg01no470_g19.g1 PHD_FILE: MSMg01no470_g19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATTCGTGTCTNTNNNNNANNNCCATAGTTACACACCCGCGGNAATCCNG
AACAAGTACCGCCACCCGCACGCAGGGAGCTCCATTGCTGACTTACCCTC
AATGGCAAATATCTTCTCCTTCAGCTGATTCTCAATATCCTTCAAAGCAT
CAAAGTTCTCCAGACTGAATACGTATTCATGGNAAGGCATCCATGCAATG
GCCTTTAATTCTTGCTTGGAATGTTCATTGTAAAAGGCCTTTCCTATCTG
TCCCCAGCGAAAACCAACCCAGTGAGAATGGAAGTTCTCCTAGGCCTGTA
TGTCATGTTACTGTTTGTTTCTGAGAACTCCCCTGTGGGTCCATGTTTTA
TTTTTTTTTTCCCCCCCCAGCTTGGGTGGGTGAAGTANNNNATGACCTTG
TGAATGTAACCCTACCACCACCCCCTCTCTCTGGNCTTCTTTCTGGCCTT
CCACGTGCGAATTGCTATGACATCATCCGACCANCCACATGGCCTCCACC
CATCCTTCTCCTCCATCATGCAATGAGACCCTCTAACACTGTGCTTTACA
ATACACGACTCCATCCCACAACACAACCACCCTAACCTTTGTAACTCAAT
CGCCCACCCCTCCCCCCTACTAGTCTTCCGTTATCTGACCCGTCTTGTTC
TCCTTTTTACCCCCTACACCACCTTGTCACTCTCCCCCACACAACCCCCC
CCACAACCATTCCTCCCCCTTACCACTCTTCCCCCTCCCCGCTACCCACT
CGCG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGCCTGCCTCTGCCTCCCAAGTGCTGGGAT
TAAAGGCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTGGGGCTCTCTCTCTCTCTCTCTCAAAGATT
TATTTATTAACTTTATGTATATGAATACACTGTAGCTGTCTCAGACACAC
CAGAAGAGGGCATCGGATCCCATTACAGATGGGTGTGAGCCACCATGTGG
TTGCTGGGATTTGAACTCAGGATTTCTGGAAGGGCAGTCAGTGCTCTTAA
CCACTGAGCCAGAAATCCACCTGCCTCTGCCTCCCAAGGGGTGGGATTAA
AGGCGTGCACCACCACTGCCCGGCGGTATTTGACATTATTTTGTATATTC
CATTTTCTTTGATATTTGCCCAGAAGTGATAATGCTATGATACTGATATG
TACTGAGCTTTTGGAGACAAGGTGTGATGGCATATGCCTATTACCTCCTG
GTTTTCAGAAGGCTAAACACGAAGATCAAGCTGAGGCCTTTGGGGCGCTG
GTTTAAAGATAATAGAACAACCCCCTTGAGCCTGTTATGCAGAATTCACC
TGTGCGCGTCACCTTTGCTAAGAATGGGTATTATTGGCCACGGTTCTGGC
GAATATAATCCGCACCTCGGTGTCTTATTCCCATTTATTTGATTTCTGGT
GACTTATAATAGTCTTTCGGCCATTATGCGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_g19.b1 MSMg01no470_g19.b1 CHROMAT_FILE:
MSMg01no470_g19.b1 PHD_FILE: MSMg01no470_g19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:19 2005
         (106 letters)



>mm_chr7_135278177_135278682
          Length = 506

 Score =  197 bits (102), Expect = 1e-55
 Identities = 105/106 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcctttaattcttgcttggaatgttcattgtaaaaggcctttcctatctgtccccagcga 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 306 gcctttaattcttgcttggaatgttcattgtaaaaggcctttcctacctgtccccagcga 247

                                                         
Query: 61  aaaccaacccagtgagaatggaagttctcctaggcctgtatgtcat 106
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aaaccaacccagtgagaatggaagttctcctaggcctgtatgtcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 506
Length adjustment: 8
Effective length of query: 98
Effective length of database: 498
Effective search space:    48804
Effective search space used:    48804
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)