BAC Information

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BAC

Clone NameMSMg01-470J12
Chromosome7 (Build37)
Map Location 81,264,805 - 81,265,117
singlet/doubletsinglet
Overlap genenone
Upstream gene4930429H19Rik, LOC665588, Rgma, Chd2, 1810026B05Rik, EG665610, LOC244061, A830073O21Rik, St8sia2, LOC100042127
Downstream geneLOC100042140, LOC546979, Slco3a1, EG665308, EG665641, 0610006L08Rik, Sv2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470J12.T7 (MSMg01no470_j12.b1)MSMg01-470J12.TJ (MSMg01no470_j12.g1)
ACCAG553560AG553561
length936786
length of high quality
(start - end)
---436 (80 - 515)
definitionCHROMAT_FILE: MSMg01no470_j12.b1 PHD_FILE: MSMg01no470_j12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:33 2005CHROMAT_FILE: MSMg01no470_j12.g1 PHD_FILE: MSMg01no470_j12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACCTCACXXXXXXXXXXXXXXXXXXXXXXXXXXXCACATACACAACCAC
GCCGCCGGAANTCACTCTCTTCTCCTACCCCACTTCATCTTAAAGNTCCC
AGGTTTACCTAAACACCCACCTACACTCCCTCTCTCCCCCCCCCACACAC
TCCGGGAATGGGATGTTTTGTCGTTCTCTGGGGTCTGTCTATGGGGTTGC
AACCCAACTTTACGGACAACAAGGAATCACTTAAAAATTCGCGCTGGTCT
TCCTGAAGCTCGAACACGATTTCTTTCCTTGTCTGGTCACCCATTTCTAT
GTTATACAATAAGCCACGTCATACTGCGTTCTTAGCACGATTAAGTGCGT
AATCGCAATCCACATCGCACACTCGGAATTGTCNGTTGCGCTTTGCCTCG
CCAGGCCAGATACCTTCCACCCACTTCTATATATTTTGTATCTTGAGTCA
CTCTATCGGCATAGCCCACTCCCACTCATCGATCTATCTGACAGATCTCG
AGTACTGCCCCATTCTATGTTCTCGTTGCCGATTACCCTTGTATATCACG
TATTACATTCTATAACCACCAACACTGATTTCTCATCATTCCATTCACCC
TCATACTCATTCGCTTCCCCTCTCGCGTCACCCACCACCACCGCCTATCT
CTTGTATACCCTATTCTTCACCTCCACCTATCCATCCCGTCTCCTACTCA
TTCACCTTTTTTTCTCCCCTCCCCCTTTTCTTCCTCTTTTCTTCTCCCCC
CCACCCCCGCTCTCTCTCTCCTTCCCCTCTATCCGCTATCTCTCCCTTCC
ACCCCCTCGACTTCTCTTTCTATCCTTCCCTCCTCCACGCCGCTTTTTTT
TTCCCCTCTTTTCCCCTCCCTCCTCTTTTCTTTTCTCTTGCTCCCTCCCT
TTATTGTACCTTCTCCCCTATATCTCTCCCCCTCTC
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCGAATGAGGCTTCTAAATG
GAACTTAATTATAATCCCTATCCAAAACAGATAAAGAAACTTGGCCATTA
ATGAGGTGCACACTAAATGCCAGGTGCTAGGTTAGGCATATTTCCATGTG
ATCACTTCTGTTATTTCATTTAATTGCCACAGTAATTCTATAAGTCATGT
GTGATGACCTTATTTGCAGTCAGTGATGAGGTTCAGATAGATTCAGTGAC
TTGCATATGATTGGGGAATCAGCATACTATACAGTCAGAGTTCCTTCCTG
TGTCTGTGTGACTCCAAAACAAACACTCAGGCCCTCTCTCCGAACCACAT
TGATCTCCATGTTGCAAAAGGCTACACATTCTTGCATATTTAGGTTGAGC
CAAGACCCTTAGGTTTTCACCCAAAGCACAGGTTATTACTACATACATCC
TGATCTCCATTTGCCTTGTTCCAGGAGCAATCTACATTTGTAAGATGCTG
TGACTATGAGGACCCCAAAATCTACTTACCTGATCTACTCGTCAGTGATT
TACCCGACATTCTGTCCTATGCCCCGACTGTCTCTCCACTACCCCTTTTA
ATGTCTCTATCCCCGCTCTTTGTTTTCTTTCCCCCTCTGTGTGCCCACCT
CTCTTCGCTCCTTTGTCTCTTATTTTTTATACTATCCCACGTTACCCTCG
TACCTATATTCGCCCCTTTCTTGTTCTCCTATCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_j12.g1 MSMg01no470_j12.g1 CHROMAT_FILE:
MSMg01no470_j12.g1 PHD_FILE: MSMg01no470_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:34 2005
         (436 letters)



>mm_chr7_81264282_81265117
          Length = 836

 Score =  605 bits (313), Expect = e-177
 Identities = 313/313 (100%)
 Strand = Plus / Minus

                                                                       
Query: 124 cacttctgttatttcatttaattgccacagtaattctataagtcatgtgtgatgacctta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 cacttctgttatttcatttaattgccacagtaattctataagtcatgtgtgatgacctta 777

                                                                       
Query: 184 tttgcagtcagtgatgaggttcagatagattcagtgacttgcatatgattggggaatcag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 tttgcagtcagtgatgaggttcagatagattcagtgacttgcatatgattggggaatcag 717

                                                                       
Query: 244 catactatacagtcagagttccttcctgtgtctgtgtgactccaaaacaaacactcaggc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 catactatacagtcagagttccttcctgtgtctgtgtgactccaaaacaaacactcaggc 657

                                                                       
Query: 304 cctctctccgaaccacattgatctccatgttgcaaaaggctacacattcttgcatattta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 cctctctccgaaccacattgatctccatgttgcaaaaggctacacattcttgcatattta 597

                                                                       
Query: 364 ggttgagccaagacccttaggttttcacccaaagcacaggttattactacatacatcctg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ggttgagccaagacccttaggttttcacccaaagcacaggttattactacatacatcctg 537

                        
Query: 424 atctccatttgcc 436
           |||||||||||||
Sbjct: 536 atctccatttgcc 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)