Query= MSMg01no470_j23.b1 MSMg01no470_j23.b1 CHROMAT_FILE:
MSMg01no470_j23.b1 PHD_FILE: MSMg01no470_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:36 2005
(333 letters)
>mm_chr7_47853905_47854639
Length = 735
Score = 391 bits (202), Expect = e-113
Identities = 212/216 (98%), Gaps = 2/216 (0%)
Strand = Plus / Plus
Query: 1 ggataaatacttcttctgactcctatacttcacctctttacatgtgaggatatgtgttaa 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 ggataaatacttcttctgactcctatacctcacctctttacatgtgaggatatgtgttaa 260
Query: 61 ttttatctttctacattccttgaacttttggaaattatttcatacctagtttgaaaccaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 ttttatctttctacattccttgaacttttggaaattatttcatacctagtttgaaatcaa 320
Query: 121 ggtccacaaggaggaattgaattggtttaa--gccatgtgcctagaggtgctactagcag 178
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 ggtccacaaggaggaattgaattggtttaaaagccatgtgcctagaggtgctactagcag 380
Query: 179 aatcaatttagattaaatttttgaagaagtattttt 214
||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcaatttagattaaatttttgaagaagtattttt 416
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 735
Length adjustment: 9
Effective length of query: 324
Effective length of database: 726
Effective search space: 235224
Effective search space used: 235224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no470_j23.g1 MSMg01no470_j23.g1 CHROMAT_FILE:
MSMg01no470_j23.g1 PHD_FILE: MSMg01no470_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:36 2005
(470 letters)
>mm_chr7_47993822_47994694
Length = 873
Score = 806 bits (417), Expect = 0.0
Identities = 458/473 (96%), Gaps = 3/473 (0%)
Strand = Plus / Minus
Query: 1 cattgtctttcctagtgaaaaagattcattagagtgcctggcaggaagagcagggcagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cattgtctttcctagtgaaaaagattcattagagtgcctggcaggaagagcagggcagtg 439
Query: 61 gagtctaaggctggggctggagctatctcatttttgctgcagacttgaccaaacgggaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 438 gagtctaaggctggggctggagctatctcatttttgctgcagacttgaccaaaggggaaa 379
Query: 121 aagaac---aggtcactcacatcctgtcctggtcagcacaggcctcttgggtgcttacct 177
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aagaacaggaggtcactcacatcctgtcctggtcagcacaggcctcttgggtgcttacct 319
Query: 178 tagtttgcagcctgcattgggaagtttccagcggtgagggaaagaaagaagccctggata 237
||||||||||||||||||||||||||||||| || |||||||| |||||| |||||||||
Sbjct: 318 tagtttgcagcctgcattgggaagtttccagtggcgagggaaataaagaaaccctggata 259
Query: 238 gtgtatagctctcatattcatgggtctgtctttactgtgaagtttataggagaaaattgt 297
|||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 258 gtgtatagctctcagaagcatgggcctgtctttactgtgaagtttataggagaaaattgt 199
Query: 298 caggcatggagcatacctgcaatcccagcactcagaaagcagaggcaggaagatcataaa 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 caggcatggagcatacctgcaatcccagcactcagaaagcagaggcaggaagatcataaa 139
Query: 358 ttaaaagttatgctcagctatatagaaagtttgggctatagaagactgagtctcatatat 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 ttaaaagttatgctcagctatatagaaagtttgggctatagaagactgagtctcatatat 79
Query: 418 gtaggtgcaagagggattatacggatttcttttgtgcctcattcttgaccccc 470
| ||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 78 gcaggtgaaagagggattatacggatttcttttgtgccgcattcttgaccccc 26
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 873
Length adjustment: 10
Effective length of query: 460
Effective length of database: 863
Effective search space: 396980
Effective search space used: 396980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
