BAC Information

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BAC

Clone NameMSMg01-470K04
Chromosome7 (Build37)
Map Location 83,780,697 - 83,781,118
singlet/doubletsinglet
Overlap geneEG244071
Upstream geneAkap13, Klhl25, LOC100042210, LOC434200
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470K04.T7 (MSMg01no470_k04.b1)MSMg01-470K04.TJ (MSMg01no470_k04.g1)
ACCAG553592AG553593
length776768
length of high quality
(start - end)
254 (48 - 301)477 (77 - 553)
definitionCHROMAT_FILE: MSMg01no470_k04.b1 PHD_FILE: MSMg01no470_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:37 2005CHROMAT_FILE: MSMg01no470_k04.g1 PHD_FILE: MSMg01no470_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGCATTGATTTCATCTTGCTTCTTGCTTTGGTGTTTGTTTGTT
TGTTTGTTTGTTTGTTTTGAGGGAGGAGATTTTTAAATTTCTGCCTCTAT
CTTAGTGTTTGCTGTAGCTCTGTTTAAATTTACTTCATCTTGGTCTAGCT
TTGATATATCATATGCATCTAAATATTGAGCCATTTCTTTTAGATTTCCT
AATTTAGTGAAATACAGTTTTAATGTCCTCATGTTTGTCTGAATTACTCT
AGTGCCTGTTGCAACGCTTTCTTTTTTTTCTTTAATTTTGCTAATTCATG
CCATCTCTTCCTTTTCTATTTTTGCCTAATTTGACTCAGCCTCCCGCCCC
TCTTGCTTATCTTTTTACAGCCCCCGCCTCACTTTTCACCCATTCCCCGC
ACTGGCCCCCCCATTTCCTCTTCTTCTACCCCTCCCCGCACTCTTTGTCA
TCCTTTGCCTTTGCCTTTACCATCTCCTTCCGCCTTCTTTCCCCTATTGC
CTCCTTCCTAACCTTATGCCCTTCTTCTCAACTCCTCTGATCTCCTCCCC
CTCCCCCCTTTTCCCCTCTCTCTCCCCTTCTCCCCCATTTTCTTCATTCC
CCCCTTTTTTCCCTCTCTCCCTTCTTTTCTCCCCCCTTTTTTTCTTTTCT
CTTTTTCGCCCTATTTCCCCCCTCTCTCTTTCTTTTCTTACGCAGGCGTC
CCTCCCCCTTTATCCCCTCTCCCCCC
ACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAATGTTAAATTCCCCTAACTTA
GGTTTACAAAAATAAATTTAAAACATACAGTTGTTTTGTTTCTTTTCAGC
TGTTATTCTTTTCTTGTTCTTCTAAGTTTTAAATTACGTTTCTTTCTTTG
TTTGTTTGTTTATTATTTGGGATATGTGCATGCCATAGCCAGATGACACC
TTACTAAAAATCAGATTTATTTTTTCTTCTACCATGTTGTTCTCAAAGAT
GGAACTCAGATCTGCAAGCTTAGCATTTTTTTCCGTGATCCACTGGGGCA
ATTTTGTCTACCACTATTTCTACTGTTCTAATTCAGAAAAATAATTTCTA
TTCTTAAATAAAAGGTAGGCTGAAGCTTCATATTACATGCACAAAAAAGT
ATGCATCTTTCTCATTCTATTAATCTGCATGTTCCAAGGACATGAGTTAT
ATAGAGGTGAGAACATCACTTAAATCGATGTTATCTGTCATCTGTTTTGC
AAGGCAAAATGCCAGTTCTGGAGAAGGAAGGATAATATGCAGCGCAGCTA
TTTTTCCCCTTTTTTCTCCTTTTTTTCCTCTTTTCTACCCATTTTTTCCT
TTTTTTTTTACCCCCTTTCTCCATTCTTCTTTTCTTTTTTTATCAACGCT
ATTATTTTCTCAATTACTCATTATTTTTTACTCCATATCCTAATCCTTTT
ACGTGACCGCATCTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_k04.g1 MSMg01no470_k04.g1 CHROMAT_FILE:
MSMg01no470_k04.g1 PHD_FILE: MSMg01no470_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:37 2005
         (477 letters)



>mm_chr7_83780242_83781118
          Length = 877

 Score =  758 bits (392), Expect = 0.0
 Identities = 414/428 (96%), Gaps = 12/428 (2%)
 Strand = Plus / Minus

                                                                       
Query: 56  tgttttgtttcttttcagctgttattcttttcttgttcttctaagttttaaattacgttt 115
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 tgttttgtttcttttcatctgttattcttttcttgttcttctaagttttaaattacgttt 818

                                                                       
Query: 116 ctttctttgtttgtttgtttattatttgggatatgtgcatgccatagccagatgacacct 175
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 ctttgtttgtttgtttgtttattatttgggatatgtgcatgccatagccagatgacacct 758

                                                                       
Query: 176 tactaaaaatcagatttattttttcttctaccatgttgttctcaaagatggaactcagat 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 tactaaaaatcagatttattttttcttctaccatgttgttctcaaagatggaactcagat 698

                                                                       
Query: 236 ctgcaagcttagca------tttttttccgtgatccactggggcaattttgtctaccact 289
           ||||||||||||||            ||||||||||||||||||||||||||||||||||
Sbjct: 697 ctgcaagcttagcaacaagc------tccgtgatccactggggcaattttgtctaccact 644

                                                                       
Query: 290 atttctactgttctaattcagaaaaataatttctattcttaaataaaaggtaggctgaag 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 atttctactgttctaattcagaaaaataatttctattcttaaataaaaggtaggctgaag 584

                                                                       
Query: 350 cttcatattacatgcacaaaaaagtatgcatctttctcattctattaatctgcatgttcc 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cttcatattacatgcacaaaaaagtatgcatctttctcattctattaatctgcatgttcc 524

                                                                       
Query: 410 aaggacatgagttatatagaggtgagaacatcacttaaatcgatgttatctgtcatctgt 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aaggacatgagttatatagaggtgagaacatcacttaaatcgatgttatctgtcatctgt 464

                   
Query: 470 tttgcaag 477
           ||||||||
Sbjct: 463 tttgcaag 456


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)