BAC Information

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BAC

Clone NameMSMg01-470M22
Chromosome7 (Build37)
Map Location 62,050,765 - 62,261,327
singlet/doubletdoublet
Overlap geneLuzp2
Upstream geneLOC668789, Mrps33p, LOC622146
Downstream geneLOC668796, Siglech, Tubgcp5, Cyfip1, Nipa2, Nipa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470M22.T7 (MSMg01no470_m22.b1)MSMg01-470M22.TJ (MSMg01no470_m22.g1)
ACCAG553723AG553724
length772771
length of high quality
(start - end)
409 (44 - 452)507 (71 - 577)
definitionCHROMAT_FILE: MSMg01no470_m22.b1 PHD_FILE: MSMg01no470_m22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:50 2005CHROMAT_FILE: MSMg01no470_m22.g1 PHD_FILE: MSMg01no470_m22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,050,765 - 62,051,171)(62,260,821 - 62,261,327)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACTGCTTATGTTTGAAGTTCACAAACCCATAAAATTTGTTAAAACATCT
TTACAAAATAACAAGACAGAACTTCTCTAGTATATACCTCTTGGGATCCT
GAATACCTGAGTTATGTGGGTTGGTTTTCTTTTGAGAATGGCTTATATTA
AAAATTCTATTAAGACTGGTATAATGTTTACAATGGGACTATAAAATATA
TCCTTACATTAAAATTGAGAGGAAGGGAAACTTATTAATTTAATAGTTTA
TCTTATGTGGGTTTTCATGGAATATATTTAGATCATATTCTTTTCCTCCC
ACAAGTTCTCCCTGATCTTCCCTACTCAACTTCACATTCTTTCTCTCGCT
CAACAAAAAGAAATCTCAAACCAAAACAAGAAAACAAAATATTATATACC
TACATACAACCAATGAGTCCAATTTATATTGGCCAACTACTCCTAAATAT
GTGGCCTTCCTTGGACTATGGTTGATATCATTCTATTGGAGAAAACCATT
TTTTCCCTCTCACAATAGATATCAATTGTAAATAGCTTCTTGGTTCAAGA
TGGGAATTTACACTAACTTGCTTTTCTCTGCCNCAGATTTTGTCTGACCT
GAATGAATGGAAACCAGCCTATATATGATGTCCCCACCCCCCTGAATTAT
ATGTACTTCTCCCCCGCTCCTGCGGAAAAAATTTTTTTTTTCGGAGAGTC
CCCCCCCCTGTGAACCTTCCAN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATCTCTCTGCACATATTCTATTTTATGACCCA
ATAAAGGAAGCTGTTTAGCAGTAGGGGGTCTGCATTACATGAGCTTACTG
AAAGTGTTCTTTGGATTAGAAGTTAGGAGTGAAAAACACCCTTCACGTTT
GTCTCCTAACTAGAGGACATGATATATACCAAGAGGCAGGGGATGAGGAA
GGGGGTCGTTTTCTATAGAGCAAGCTCCAAATCTGGGCACAACCAGGTAT
CATACTTTCAGAGAAACACATTTCTTTATGAATAAATGTTTCCTGGTGTT
GGTATGAACTCTGTCCCTCTCACAAGAAAATTGGCTTCTTATTTGTCAAG
TCTAAATTTACATTGAGAAATGCCCTGCATTTTATTAAAGTCTTAGCTCT
GAATTCACCTTGTTTTCCTCTGATGTATTTCAGACTTAATTGACATATGT
TAAAGTAGCTGTCTATCTGAGCATGCATATGCACTTTAGGTATTTGGTCC
ATGTTTTTAAGTAAATGATACTTAAGACCTGTAGCTAGCTTAGAAGTATT
ACAGCTCTCATTGTGGACACATATTGTCTGATACAGTCAGTGCTTTATGA
CACATTCTTGTTTTCTTGACAACGAGCATAATTGGAGTGCCGGAAAAAAA
TCTCGGCCTAGTTTTGGATGCTGGTCCCTCCAACTCTCCTCTTCCCTCTC
CTTTCTCTTATCCTTTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_m22.b1 MSMg01no470_m22.b1 CHROMAT_FILE:
MSMg01no470_m22.b1 PHD_FILE: MSMg01no470_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:50 2005
         (409 letters)



>mm_chr7_62050563_62051371
          Length = 809

 Score =  779 bits (403), Expect = 0.0
 Identities = 406/407 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcactgcttatgtttgaagttcacaaacccataaaatttgttaaaacatctttaca 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcactgcttatgtttgaagttcacaaacccataaaatttgttaaaacatctttaca 262

                                                                       
Query: 63  aaataacaagacagaacttctctagtatatacctcttgggatcctgaatacctgagttat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaataacaagacagaacttctctagtatatacctcttgggatcctgaatacctgagttat 322

                                                                       
Query: 123 gtgggttggttttcttttgagaatggcttatattaaaaattctattaagactggtataat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtgggttggttttcttttgagaatggcttatattaaaaattctattaagactggtataat 382

                                                                       
Query: 183 gtttacaatgggactataaaatatatccttacattaaaattgagaggaagggaaacttat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtttacaatgggactataaaatatatccttacattaaaattgagaggaagggaaacttat 442

                                                                       
Query: 243 taatttaatagtttatcttatgtgggttttcatggaatatatttagatcatattcttttc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 taatttaatagtttatcttatgtgggttttcatggaatatatttagatcatattcttttc 502

                                                                       
Query: 303 ctcccacaagttctccctgatcttccctactcaacttcacattctttctctcgctcaaca 362
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 503 ctcccacaagttctccctgatcttccctactcaacttcacattctttctctcactcaaca 562

                                                          
Query: 363 aaaagaaatctcaaaccaaaacaagaaaacaaaatattatataccta 409
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aaaagaaatctcaaaccaaaacaagaaaacaaaatattatataccta 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no470_m22.g1 MSMg01no470_m22.g1 CHROMAT_FILE:
MSMg01no470_m22.g1 PHD_FILE: MSMg01no470_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:50 2005
         (507 letters)



>mm_chr7_62260621_62261527
          Length = 907

 Score =  942 bits (487), Expect = 0.0
 Identities = 502/507 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctctgcacatattctattttatgacccaataaaggaagctgtttagcagtagggggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ctctctgcacatattctattttatgacccaataaaggaagctgtttagcagtagggggtc 648

                                                                       
Query: 61  tgcattacatgagcttactgaaagtgttctttggattagaagttaggagtgaaaaacacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tgcattacatgagcttactgaaagtgttctttggattagaagttaggagtgaaaaacacc 588

                                                                       
Query: 121 cttcacgtttgtctcctaactagaggacatgatatataccaagaggcaggggatgaggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 cttcacgtttgtctcctaactagaggacatgatatataccaagaggcaggggatgaggaa 528

                                                                       
Query: 181 gggggtcgttttctatagagcaagctccaaatctgggcacaaccaggtatcatactttca 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 527 gggggtcgttttctatagagcaagctccaaatctgggcacgaccaggtatcatactttca 468

                                                                       
Query: 241 gagaaacacatttctttatgaataaatgtttcctggtgttggtatgaactctgtccctct 300
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gagaaacacatttcaagatgaataaatgtttcctggtgttggtatgaactctgtccctct 408

                                                                       
Query: 301 cacaagaaaattggcttcttatttgtcaagtctaaatttacattgagaaatgccctgcat 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 cacaagaaaattggtttcttatttgtcaagtctaaatttacattgagaaatgccctgcat 348

                                                                       
Query: 361 tttattaaagtcttagctctgaattcaccttgttttcctctgatgtatttcagacttaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tttattaaagtcttagctctgaattcaccttgttttcctctgatgtatttcagacttaat 288

                                                                       
Query: 421 tgacatatgttaaagtagctgtctatctgagcatgcatatgcactttaggtatttggtcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tgacatatgttaaagtagctgtctatctgagcatgcatatgcactttaggtatttggtcc 228

                                      
Query: 481 atgtttttaagtaaatgatacttaaga 507
           |||||||||||||||||||||||||||
Sbjct: 227 atgtttttaagtaaatgatacttaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)