BAC Information

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BAC

Clone NameMSMg01-470P07
Chromosome7 (Build37)
Map Location 151,391,142 - 151,391,302
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnq1, Cdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5, Mrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498
Downstream geneShank2, Cttn, Ppfia1, Fadd, Tmem16a, LOC669079, LOC677315, Fgf3, Fgf4, Fgf15, Oraov1, Ccnd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470P07.T7 (MSMg01no470_p07.b1)MSMg01-470P07.TJ (MSMg01no470_p07.g1)
ACCAG553836AG553837
length806884
length of high quality
(start - end)
34 (85 - 118)160 (80 - 239)
definitionCHROMAT_FILE: MSMg01no470_p07.b1 PHD_FILE: MSMg01no470_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:02 2005CHROMAT_FILE: MSMg01no470_p07.g1 PHD_FILE: MSMg01no470_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATAATTTGCGGCGCTAAACGAATACCATTTTCTCACCGCCGCGGAA
TTCTAGAGGTTCCCACACAAAGATGCTGGCACAAAAGTGGCAAACAGCTA
GGGTTCTGAGACATTCCTCAGGACAAGCCCATGGTGTTGGCTGTGTGCTG
ACCTCACATGTGGCCTCCTGGCTGTGAGGCCTCTTGGCGGGGGGGGGCCG
TCAGCACCGCTCCTGTGCACAGGAGGCCCGCGCCTCCTAGTGGACAATCT
TTTTATCCTATAAAGACCTTCCCTGCCCTCCATCCCTTCCTCCTCCCCCA
TCTACTCCTTTCCTCTCCTTGCTCACTTTCCCCCCCCCTCCCCCTCCTCC
CCCGACCCCCTTTTTTTTTCCTCCCCCCCCTGTGGGCCCGGGCCCCCTTC
TCCCCCCCCCCCCCTTTTCCCCCCCCCCCCCCCTTCTTTCCCGTCCCCAC
TTCTCCCCCCCCCCCCCCCTCCCCACTCCCCTACCACCTCCCTCCCCCCC
CCCCCTCCACCCCACCCCCCCCCCCCCTATCCCCCCCTTCCTTATCCTCC
CCCCCCCACTCCTTCGTCCCACCTCCGCCCCTTCCCCATCCCATCCTCCC
TCCTCCCCCCCCCCCCCCTTCCCTCTCCCATCTTCCCCTCTACCCCCCCT
CCCCCCTCCCCCTCCTCTTTCCCTCCTTTCTCCCCACCCTCCCCTCCAAC
CTACCCTCTCCCTCTTTCCTCCCCCCTCCCCTCCCTTCTTTTTCCCCCCT
CCTCTTCCTCCCCTACCCCACCCCCCCATCCCACTCCTCCTCTCCCCTCC
CTCTTN
TCCCCAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGACATGAACTGCCCGGAG
CCAGCAGGAGAGTTGGTGGCTGCCAAAGGCTGATGAGAGAGGGAAGCAAG
AGACTGTTTTGGGTGCCAGCTTTATACTTAAGGCACTAGAGCATATTGGA
ATTCAATACACTGAGGTTTTCAGAACTATGTGAATAAAAAGAAGAAAAGA
AGAAGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGATAGGAGAGGCCATC
CTCCCCTTCCCCTTTTCTCCTCTTCTTTTTTTTTCCCTTCCCTCTCTCTC
CTCTTTTCCCTTTCCTTTCTTTCCCCCCCCCTCTCCTCCTCCCCTTTCCC
CCCCCCTCCCCCCCCCCTTTTTTCTTCCTCTCCCCCCCCTTTTCCCACCT
CCTTTTTCCTTTTTTTTCCCTATCATCCCCCCTCTTTCCCTTCTTCCCTC
CTGTTCCTTCCCCCATTTCCTCTTTCCTCCTCTTCGCCTCCCCCTCCCTC
CCTTTCCATTCCCCTCTCCTTCTTTCCTCCCTCCCCCCCCTTCCCTCCTT
CTTCCCTCCCCTTCTCCTTCTTCTTCTCTTTCCTCCCTCCCCCACCTCCT
CTTTTTCCTCTCTCCCTTTACTCCCTCCCCACCCCCCCCCCCTCCCTCCT
CTCCCTCTTTTTTTCTTTTCTTCTTACTCCTTTCTTCTCCCTTCCTTCTA
TTTCCGTCTACCCTTCCCTTTCTTCGTTCTTCCCCTTCCCCCCCCTCCTT
CCCTTCCCTTTCCCTTCCTTTTCCTCTATTCCACCTCGTTCTCTCTCTCC
TCCTCCTCCTCCCANTCCCACACTCTTTCCGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_p07.g1 MSMg01no470_p07.g1 CHROMAT_FILE:
MSMg01no470_p07.g1 PHD_FILE: MSMg01no470_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:02 2005
         (160 letters)



>mm_chr7_151390942_151391502
          Length = 561

 Score =  296 bits (153), Expect = 5e-85
 Identities = 159/161 (98%), Gaps = 1/161 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgacatgaactgcccggagccagcaggagagttggtggctgccaaaggctgatgagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 catgacatgaactgcccggagccagcaggagagttggtggctgccaaaggctgatgagag 302

                                                                       
Query: 61  agggaagcaagagactgttttgggtgccagctttatacttaaggcactagagcatattgg 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 301 agggaagcaagagactgttttgggtgccagctttatagttaaggcactagagcatattgg 242

                                                    
Query: 121 aattcaatacactgagg-ttttcagaactatgtgaataaaa 160
           ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 241 aattcaatacactgaggtttttcagaactatgtgaataaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 561
Length adjustment: 8
Effective length of query: 152
Effective length of database: 553
Effective search space:    84056
Effective search space used:    84056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)