BAC Information

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BAC

Clone NameMSMg01-471A16
Chromosome7 (Build37)
Map Location 116,399,301 - 116,399,994
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1
Downstream geneStk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471A16.T7 (MSMg01no471_a16.b1)MSMg01-471A16.TJ (MSMg01no471_a16.g1)
ACCAG553902AG553903
length1,089771
length of high quality
(start - end)		---606 (75 - 680)
definitionCHROMAT_FILE: MSMg01no471_a16.b1 PHD_FILE: MSMg01no471_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:09 2005CHROMAT_FILE: MSMg01no471_a16.g1 PHD_FILE: MSMg01no471_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCTTTATCCCTCTGCCCTCTTGTGCCACTCCGATTATTTCCTATAGTAG
TGGCGGGGGTCTTTGATCTCTGCCTTTCTACTACAGGTTCGACATACCCT
AGTTCATCTAATCGGTCGTACAGCAGCATAAGATAAAGTAATTACTCTAA
TATGAAGAAATACCATAATAGAATTGATGTAGCATTCTATAAATAAGGTA
TCATACATCCCATTCATTCTTTCACGGGGATAATGCAGCATCCAAATACA
TATCCCTGCAGTATGTCCAGTTCTCACTACCTATTTCTGTACATGTGCTA
TATTATCTAACCAACCTCAGTGCTGATTATCTATATTGCCTGCGTGTTTA
CATACGACTAATACATTCTCTTCCATTTGCCTCGCCTGTCCACTTGCATC
GCTTTTTTACGCCCTTGCTTACTGTTATATATCATCCTTCGCGTGTTTTC
ACATCATTAATAACGAGCGTACATCATTCTTTTACACGCGTAAGTATTCC
ATGCAGATATGACATTGCTCTTGGATTCATATTATCTCCATTATACCAGT
TTTCACTTATCTATTCACACCACCCGATCTTTTTGGCCTACCTATATAAT
AGTTTTATTAGGCCAATCTCTTTAATTGTTTGATCTATGTCCTTTACATG
TTCGTGCATATGAAATTCTCATAATGCGCTATCTCTATCGTGTACATATA
TCGGCATCAACGGTATAATATGCTGTGTAACCACTTCTCACCGCACACGC
CCGAGTCCACTTACCTTAATTCTCTTAAAAAATAAACAAAACCCACACGC
CTCCATGGAATACATACTCCCGAAGCGCCACGCTAGCGCAAGATGACGGT
TTGTGCATCTTATCCATTCTACTTTACCACATGTTTGAATGTTCAATTGC
CTTATCAACGCAGCATTACGCACTATCCCACTTATACTCGGTGCGTACCC
GCTATACGTACTACACCGCACATTATTATTGTGTTCGCGTCACGCCGCGG
TGTTCCATTCTCGTTCTTTCTATTCTAATGTCTCCTGACGTTTATATCCT
ATTGGTTCTACCATCGAGACTCTATTATTCGATCAACCN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCTCTCGCCCTCAATGCCCCATCAG
TTCCCTAATTAGCAGCGCGCGGCGCGATTACACATTCTCCGCAGCTCGCT
GGGTCCGGCCCCCCTAATGAGTGTTTGTGGACAGCTGGGAGCCCAGTCCG
CCGCCCACGAACCAGGAGTCAGGGCCCAGGAGTGTGAGCTGTCAGCTCCG
TGATGGGGCTGGAGCTGGTCGCAGCCCTGCGGGCCTCCAGGAGGAAAAGC
CTTGAAATATAAATGAAGATGAATATTCATATTTGGTTCAATAAGTGCCA
ACTATTAATATACATGTCTGTCGGGAAGAGAAGGTAGCGTGGAGCCAATT
GTGCAGGGCATAATTGGGCTCCTAATTCACAATTAGCCTCGAGCTCCAAG
CCTCTGCATAGCTCAGGACCCAGGAGGGTAGGGGTTGCCTGCAGGGAAGG
CCAAACACCTCCGGGCCTCCCAGCTGGTGGCCCCCGCTTCCTGGGTCACT
TTTGGCCAAATACAATGCTCCTGAAAGCTGGTGGCCTGCACTTGAAGCTG
TAGGCTCAAAAGTGCTGGCTCTCCACCTTCAAAAGCCCCTCACAGTGGAA
ACTGTGTGCAGATCCAGGGGAACTGAAGCCAGAACACTAGTGCTGGCCTG
TTTGACTGTAACTCTGAAGTCTGGCTTTACAGAGCCCAGCCCTGGTAGCC
AGAAAGACTCTAGTACCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_a16.g1 MSMg01no471_a16.g1 CHROMAT_FILE:
MSMg01no471_a16.g1 PHD_FILE: MSMg01no471_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:09 2005
         (606 letters)



>mm_chr7_116399189_116400194
          Length = 1006

 Score =  990 bits (512), Expect = 0.0
 Identities = 605/694 (87%), Gaps = 88/694 (12%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctctcgccctcaatgccccatcagttccctaattagcagcgcgcggcgcgattacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 tcctctcgccctcaatgccccatcagttccctaattagcagcgcgcggcgcgattacaca 172

                                                                       
Query: 61  ttctccgcagctcgctgggtccggcccccctaatgagtgtttgtggacagctgggagccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 ttctccgcagctcgctgggtccggcccccctaatgagtgtttgtggacagctgggagccc 232

                                                                       
Query: 121 agtccgccgcccacgaaccaggagtcagggcccaggagtgtgagctgtcagctccgtgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 agtccgccgcccacgaaccaggagtcagggcccaggagtgtgagctgtcagctccgtgat 292

                                                                       
Query: 181 ggggctggagctggtcgcagccctgcgggcctccaggaggaaaagccttgaaatataaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ggggctggagctggtcgcagccctgcgggcctccaggaggaaaagccttgaaatataaat 352

                                                                       
Query: 241 gaagatgaatattcatatttggttcaataagtgccaactattaatatacatgtctgtcgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gaagatgaatattcatatttggttcaataagtgccaactattaatatacatgtctgtcgg 412

                                                                       
Query: 301 gaagagaaggtagcgtggagccaattgtgcagggcataattgggctcctaattcacaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gaagagaaggtagcgtggagccaattgtgcagggcataattgggctcctaattcacaatt 472

                                                                       
Query: 361 agcctcgagctccaagcctctgcatagctcaggacccaggagggtaggggttgcctgcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 agcctcgagctccaagcctctgcatagctcaggacccaggagggtaggggttgcctgcag 532

                                                                       
Query: 421 ggaaggccaaacacctccgggcctccca-------------------------------- 448
           ||||||||||||||||| ||||||||||                                
Sbjct: 533 ggaaggccaaacacctcagggcctcccatccttaaagttctctagagaagaggaggaaga 592

                                                                       
Query: 449 --------------------------------------------------------gctg 452
                                                                   ||||
Sbjct: 593 aaacgaggccaggatccctttccgaaacacttcaggagttactgggaatgcagcccgctg 652

                                                                       
Query: 453 gtggcccccgcttcctgggtcacttttggccaaatacaatgctcctgaaagctggtggcc 512
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gtggcccccgcttcctgggtcacttttggccaaatacaatgctcctgaaagctggtggcc 712

                                                                       
Query: 513 tgcacttgaagctgtaggctcaaaagtgctggctctccaccttcaaaagcccctcacagt 572
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tgcacttgaagctgtaggctcaaaagtgctggctctccaccttcaaaagcccctcacagt 772

                                             
Query: 573 ggaaactgtgtgcagatccaggggaactgaagcc 606
           ||||||||||||||||||||||||||||||||||
Sbjct: 773 ggaaactgtgtgcagatccaggggaactgaagcc 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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