BAC Information

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BAC

Clone NameMSMg01-471C21
Chromosome7 (Build37)
Map Location 5,328,057 - 5,328,626
singlet/doubletsinglet
Overlap genenone
Upstream geneGp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350
Downstream geneV1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471C21.T7 (MSMg01no471_c21.b1)MSMg01-471C21.TJ (MSMg01no471_c21.g1)
ACCAG554008AG554009
length754774
length of high quality
(start - end)		551 (72 - 622)577 (76 - 652)
definitionCHROMAT_FILE: MSMg01no471_c21.b1 PHD_FILE: MSMg01no471_c21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:20 2005CHROMAT_FILE: MSMg01no471_c21.g1 PHD_FILE: MSMg01no471_c21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:20 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGGACAGTTCCGACTGTAATAGAGAGATTTCTCTCTCAAACT
AAAACAACAGCAAAACCTCACTTATTTCCAAATTACCGAATTTAACCCTT
TTCCACTGTGCTTAGTTTTCTTCTTTGTTTAGGAGATTCCTAATGTATCT
GCCCTCCTTTTCCTAAGAGGCTCCCCACCATGATAGGTGTAAACAAGTAT
TAGTGCTCTGAGAGCACACTAGAGCAGTGTGGAGAAGGAGCTGTGAGTGT
GGGCTGTATTGGAAGGAGAAGGGCTGTTGGGCTGTGCTGCCTCCTGGAGC
TCTTGGCTGTGTTGCACCGCTTCTCTCTCTTCCTTTTTCCCCTAGGAAAT
CAAAATCAGCAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCC
AAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAG
AACCCCAATGAAATGGACAAATTTCTAAAAAGATACCAGGTACCAAATTA
AATTAGGATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGAAAT
GGAAGCAGTCATTAATAGTCTCCCAACCAATAAAAGTCCAGGACCAGATG
GGTTTAGTGCAGAGTTCTATCAGACCTTTCAAAGAGGATCTATTCCAGTT
CCTAACCAAACTATTCCCCCAATTTTTAAACCGAAAGGGACCCTCCCCCC
CCCC

TCCATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATATCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCCAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAAGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGGA
CACTCCTCCATTGTTGGTGGGATTGCAAACTTGTACAACCACTCTGGAAA
TCAGTCTGGCAGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATTTCCAGAAGATGTCCCAACGGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAACAGGCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGCAGTACTACTCAGCTATTAAAAAGGATGAAT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GTGGTAACACATTCACAAAGGAACTCACACAGTATGTACTCACTGATAAG
TGAATATTAGTCCCTAGGATACCCAAGATATAAGATACAATTTGCTAAAC
ACACTGAACTCAAGAAAAATGAAGAGTGAAGTGTGGACACTATGTCCCTC
CCTAGAAAGTGGAACAAAACACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_c21.b1 MSMg01no471_c21.b1 CHROMAT_FILE:
MSMg01no471_c21.b1 PHD_FILE: MSMg01no471_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:20 2005
         (551 letters)



>mm_chr7_5327857_5328810
          Length = 954

 Score = 1002 bits (518), Expect = 0.0
 Identities = 549/570 (96%), Gaps = 19/570 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtaatagagagatttctctctcaaactaaaacaaca---gcaaaacctcacttatttc 57
           ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||
Sbjct: 201 ctgtaatagagagatttctctctcaaactaaaacaacaacagcaaaacctcacttatttc 260

                                                                       
Query: 58  caaattaccgaatttaacccttttccactgtgcttagttttcttctttgtttaggagatt 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaattaccgaatttaacccttttccactgtgcttagttttcttctttgtttaggagatt 320

                                                                       
Query: 118 cctaatgtatctgccctccttttcctaagaggctccccaccatgataggtgtaaacaagt 177
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctaatgtgtctgccctccttttcctaagaggctccccaccatgataggtgtaaacaagt 380

                                                                       
Query: 178 attagtgctctgagagcacactagagcagtgtggagaaggagctgtgagtgtgggctgta 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attagtgctctgagagcacactagagcagtgtggagaaggagctgtgagtgtgggctgta 440

                                                                       
Query: 238 ttggaaggagaagggctg---------------ttgggctgtgctgcctcctggagctct 282
           ||||||||||||||||||               |||||||||||||||||||||||||||
Sbjct: 441 ttggaaggagaagggctggtgggcacatggctgttgggctgtgctgcctcctggagctct 500

                                                                       
Query: 283 tggctgtgttgcaccgcttctctctcttcctttttcccctaggaaatcaaaatcagcaat 342
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgactgtgttgcaccgcttctctctcttcctttttcccctaggaaatcaaaatcagcaat 560

                                                                       
Query: 343 gaaaagggagacataacaacagatcctgaagaaatccaaaacaccatcagatccttctac 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaaagggagacataacaacagatcctgaagaaatccaaaacaccatcagatccttctac 620

                                                                       
Query: 403 aaaaggctatactcaacaaaactggagaaccccaatgaaatggacaaatttctaaaaaga 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaaggctatactcaacaaaactggagaaccccaatgaaatggacaaatttctaaaaaga 680

                                                                       
Query: 463 taccaggtaccaaa-ttaaattaggatcaggttaatgatctaaacagtcctatatcccct 521
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taccaggtaccaaagttaaattaggatcaggttaatgatctaaacagtcctatatcccct 740

                                         
Query: 522 aaagaaatggaagcagtcattaatagtctc 551
           ||||||||||||||||||||||||||||||
Sbjct: 741 aaagaaatggaagcagtcattaatagtctc 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 954
Length adjustment: 10
Effective length of query: 541
Effective length of database: 944
Effective search space:   510704
Effective search space used:   510704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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