Query= MSMg01no471_h08.b1 MSMg01no471_h08.b1 CHROMAT_FILE:
MSMg01no471_h08.b1 PHD_FILE: MSMg01no471_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:43 2005
(587 letters)
>mm_chr7_120869053_120870039
Length = 987
Score = 1098 bits (568), Expect = 0.0
Identities = 583/588 (99%), Gaps = 1/588 (0%)
Strand = Plus / Plus
Query: 1 cagctaaactaagtttgtacaatacaacctgccagggaactttcagagggcaaaacataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagctaaactaagtttgtacaatacaacctgccagggaactttcagagggcaaaacataa 260
Query: 61 taacagcaaaataaagcaccagggagtgacctacctcaactgaaccggttttgttctagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taacagcaaaataaagcaccagggagtgacctacctcaactgaaccggttttgttctagg 320
Query: 121 gaagcaaggggggaaagtctattaacgtcctgacagcttttcagtatctccaatatgaaa 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 gaagcaaggggggaaagtctattaacgtcctgacagcttttcagtgtctccaatatgaaa 380
Query: 181 aaccacatgataattagcaatagatgacaaaaaagcattcagacaaaatacaatattcat 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 aaccacatgataattagcaatagatgacaaaaaagcattcagacaaaatccaatattcat 440
Query: 241 gcatgactgataaaaaagaaaccttcagagaaaactagggctggaactgtgaaggctaat 300
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 gcatgactgagaaaaaagaaaccttcagagaaaactagggctgggactgtgaaggctaat 500
Query: 301 agtgcttgccagcagggtctagagtcacctgggagacaagcctctgggcatgcttgcgag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtgcttgccagcagggtctagagtcacctgggagacaagcctctgggcatgcttgcgag 560
Query: 361 gacatttctaggttaggcaggctgaggtaggaagacactttgactatgggcagcaccatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacatttctaggttaggcaggctgaggtaggaagacactttgactatgggcagcaccatt 620
Query: 421 ccaaggactggtgcggtcctgtaacaaatcagctgtgggaagtgagccgtgcaccactgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaaggactggtgcggtcctgtaacaaatcagctgtgggaagtgagccgtgcaccactgt 680
Query: 481 acatctcttcctgctccctggctgcggatgccacgtgacgagctgctcacgtgcctgccg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acatctcttcctgctccctggctgcggatgccacgtgacgagctgctcacgtgcctgccg 740
Query: 541 ccagtccttcccccc-agatgagcctgcccttaaatttgcttgttgtc 587
||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 741 ccagtccttcccccccagatgagcctgcccttaaatttgcttgttgtc 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_h08.g1 MSMg01no471_h08.g1 CHROMAT_FILE:
MSMg01no471_h08.g1 PHD_FILE: MSMg01no471_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:43 2005
(632 letters)
>mm_chr7_121076790_121077821
Length = 1032
Score = 1056 bits (546), Expect = 0.0
Identities = 586/600 (97%), Gaps = 2/600 (0%)
Strand = Plus / Minus
Query: 1 ccaggcactggtgatgctgttgagtaaaattctagggtgtgagagctgccacccgaggat 60
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 598 ccaggcactggtgatgctgttgaggaaaattctagggtgtgagagctgccacccaaggat 539
Query: 61 ggtcctgcattctgcctatccagggtagcctgggctactgggatttctatttgtcctaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ggtcctgcattctgcctatccagggtagcctgggctactgggatttctatttgtcctaag 479
Query: 121 tctcagcttaagataaacagagaacttgggtgttcccatcgcagcaccaagagtagacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tctcagcttaagataaacagagaacttgggtgttcccatcgcagcaccaagagtagacta 419
Query: 181 agtgtcaagtgtgcatatgtttcccagtctgtgttattgtgttttataacaacagagagc 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 418 agtgtcaagtgtgcatatgtttcccagtctgtgttactgtgttttataacaacagagagc 359
Query: 241 aaatgaagacaaagcaccatgggtcttgactatgattcctgaggaggctgcaaagggaaa 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 358 aaatgaagacaaagcaccatgggtcttgattatgattcctgaggaggctgcaaagggaaa 299
Query: 301 aatcccatcatgccattctacaaagcctgctactaaaaatgctcttttggtgtctctctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aatcccatcatgccattctacaaagcctgctactaaaaatgctcttttggtgtctctctc 239
Query: 361 ctcttgtagaaaacaggttcacaaaaagtcatctttggggtgtgtgtgtgtgtgtgtgtg 420
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 238 ctcttgtagaaaacaggttcacgaaaagtcatctttggtgtgtgtgtgtgtgtgtgtgtg 179
Query: 421 tgtacgtacacataggcatctgttttcccacccttaccatgattttctttttaatggaga 480
||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 178 tgt--gtacaggtaggcatctgttttcccacccttaccatgattttctttttagtggaga 121
Query: 481 caatatggtcccttactcttcttcagtgcaactatccacccatgccccctcccctttgct 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 120 caatatggtcccttactcttcttcagtgcaactatccacccatgcccccccccctttgct 61
Query: 541 gcgtagtccccagttttaattctgtaagcacaataatatattttctgccccaggaccttt 600
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 acgtagtccccagttttagttctgtaagcacaataatatattttctgccccaggaccttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
