BAC Information

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BAC

Clone NameMSMg01-471I07
Chromosome7 (Build37)
Map Location 114,370,399 - 114,564,285
singlet/doubletdoublet
Overlap geneSyt9
Upstream geneLOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966, LOC100042141, Olfr693, Olfr694, Olfr695, Olfr696-ps1, Olfr697, Olfr698, Olfr699, Olfr700, Olfr701, Olfr702, Olfr703, Olfr704, Olfr705, Olfr706, Olfr707, Olfr708, Olfr709-ps1, Olfr710, LOC384651, Olfr6, Olfr711, GA_x5J8B7W6B6J-1784824-1783474, Olfr2, Olfr713, Olfr714, Olfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik
Downstream geneOlfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471I07.T7 (MSMg01no471_i07.b1)MSMg01-471I07.TJ (MSMg01no471_i07.g1)
ACCAG554267AG554268
length740738
length of high quality
(start - end)
407 (329 - 735)489 (78 - 566)
definitionCHROMAT_FILE: MSMg01no471_i07.b1 PHD_FILE: MSMg01no471_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:47 2005CHROMAT_FILE: MSMg01no471_i07.g1 PHD_FILE: MSMg01no471_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,370,399 - 114,370,805)(114,563,789 - 114,564,285)
sequence
NNNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGATCC
GCGGAATTCTTTTATTTCTATTAAATCTTTATAAAAATATTGGTTTGCTT
GTCACCAAATAAGAACAATAAGTTCTGTTTAAAACAATGACTGTGGGACT
GTAACTCCTCCAACCTCTGTAAGTAAAATTGCAACAATCTATGTACTACT
TTAAATCTACAGTGTGTAATTTTTTTTTTTTTACTAAAACTTAGATGACA
AGAAAACATACATTTGGTACTGGAAGTCTTAGTGGTTCCAAAATCTCATT
TAACTCAAGGAACTTTGACTCTCTTTATCCTGTAAATTTTCACCACAGTA
CTATTTTGAGATTGAGTAGCAATGCCTAATGATTTTCAGCATAGTGAGTG
CGTGAGAGCCGAACCTATATCCTGTATATCTTGCTATTCTCACTCTACTT
TGGCCCTTGTGCTTTTGTTACTGCTCAGTATAATTTAAGCCAACAAATAA
CAATTATGCAATATGTATTAAATAGTTTTGAGTGGAAAAATTTGAACTTC
AGTTACTTAAAGTTTCACTAAAGAAATAAAATTTTGCATAGGAAATAAAC
AGCCAAGAATTTCAAGGGAATTCTTCAATTCCTCTTCTATTAAAATCTTA
CTTTTTGAGCTTGGGATGTAGTTCAGTAAGTAGACACCCTGGGTTTGATC
ACCAGCACCTCCATGAAACAGAATGTGATGGTACAAACCT
TTCTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGCATGGGTATGACATTTGAT
AATGATGAGGTGCATCTGCAGCCACTTGCTGTGCAAACCTTGACTTATGT
CAGGGTAGGCTGTGGCCTATAAACTGTGGAGGGTGCTAAAGTCTTCTAGG
TTTTGTGTGTGTGAGTGTGTGTGTGTGTGTGTTTACAGTCATTACGAACA
GCAAGAGTAAACTTTTCATATTTACACAAAGACACCAGGTGAGTTAACAG
TACTTCAGAACACCTGCCAGTATGCCAGAGAGCAACAGTGGCCTGTGTGA
CCTCACCAGCCTCCAGTGTAACCATCTGAATGTCCATTACCAATAGCTCA
ACGTGTCCTCTAGACACCATGTGGGTGCTTTTTTACCAAAAAGAAGTATC
TTACAAAGAAGACTCTCCATGTTCACTCCCATCTCCTTAGAATTTGACCT
CAGCAAAGGGCTGTGGGGATGGATGAGTCAGCCTAGAACTGCAGAATATT
TTTAAAGAGGTAATTCTATTTCTCAAGTTAAGTGGGAAGATATGTGGGTC
AATTGGCTTTATAAAGCTTTAAAATTACCCCATTAATTNTTTCCTTTACA
CACAATTTTTCTTTGGGCTCTTTTTTGGGATTTTTTTTTAAAAAAAATAA
TGGGGGGGAAAAAATAGGTGGCGTTAAAAACAANNTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_i07.b1 MSMg01no471_i07.b1 CHROMAT_FILE:
MSMg01no471_i07.b1 PHD_FILE: MSMg01no471_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:47 2005
         (407 letters)



>mm_chr7_114370199_114371005
          Length = 807

 Score =  787 bits (407), Expect = 0.0
 Identities = 407/407 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgtaaattttcaccacagtactattttgagattgagtagcaatgcctaatgattttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgtaaattttcaccacagtactattttgagattgagtagcaatgcctaatgattttca 260

                                                                       
Query: 61  gcatagtgagtgcgtgagagccgaacctatatcctgtatatcttgctattctcactctac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatagtgagtgcgtgagagccgaacctatatcctgtatatcttgctattctcactctac 320

                                                                       
Query: 121 tttggcccttgtgcttttgttactgctcagtataatttaagccaacaaataacaattatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttggcccttgtgcttttgttactgctcagtataatttaagccaacaaataacaattatg 380

                                                                       
Query: 181 caatatgtattaaatagttttgagtggaaaaatttgaacttcagttacttaaagtttcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caatatgtattaaatagttttgagtggaaaaatttgaacttcagttacttaaagtttcac 440

                                                                       
Query: 241 taaagaaataaaattttgcataggaaataaacagccaagaatttcaagggaattcttcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaagaaataaaattttgcataggaaataaacagccaagaatttcaagggaattcttcaa 500

                                                                       
Query: 301 ttcctcttctattaaaatcttactttttgagcttgggatgtagttcagtaagtagacacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcctcttctattaaaatcttactttttgagcttgggatgtagttcagtaagtagacacc 560

                                                          
Query: 361 ctgggtttgatcaccagcacctccatgaaacagaatgtgatggtaca 407
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgggtttgatcaccagcacctccatgaaacagaatgtgatggtaca 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no471_i07.g1 MSMg01no471_i07.g1 CHROMAT_FILE:
MSMg01no471_i07.g1 PHD_FILE: MSMg01no471_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:47 2005
         (489 letters)



>mm_chr7_114563434_114564322
          Length = 889

 Score =  888 bits (459), Expect = 0.0
 Identities = 484/497 (97%), Gaps = 8/497 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggcatgggtatgacatttgataatgatgaggtgcatctgcagccacttgctgtgcaaa 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 ctggcacgggtatgacatttgataatgatgaggtgcatctgcagccacttgctgtgcaaa 793

                                                                       
Query: 61  ccttgacttatgtcagggtaggctgtggcctataaactgtggagggtgctaaagtcttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 ccttgacttatgtcagggtaggctgtggcctataaactgtggagggtgctaaagtcttct 733

                                                                       
Query: 121 aggttttgtgtgtgtga--------gtgtgtgtgtgtgtgtgtttacagtcattacgaac 172
           |||||||||||||||||        |||||||||||||||||||||||||||||| ||||
Sbjct: 732 aggttttgtgtgtgtgaatgtgtgtgtgtgtgtgtgtgtgtgtttacagtcattatgaac 673

                                                                       
Query: 173 agcaagagtaaacttttcatatttacacaaagacaccaggtgagttaacagtacttcaga 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 agcaagagtaaacttttcatatttacacaaagacaccaggtgagttaacagtacttcaga 613

                                                                       
Query: 233 acacctgccagtatgccagagagcaacagtggcctgtgtgacctcaccagcctccagtgt 292
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 acacctgccaggatgccagagagcaacagtggcctgtgtgacctcaccagcctccagtgt 553

                                                                       
Query: 293 aaccatctgaatgtccattaccaatagctcaacgtgtcctctagacaccatgtgggtgct 352
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 552 aaccatctgaatgtccattaccaatagctcaacgtgtcctctagacaccgtgtgggtgct 493

                                                                       
Query: 353 tttttaccaaaaagaagtatcttacaaagaagactctccatgttcactcccatctcctta 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tttttaccaaaaagaagtatcttacaaagaagactctccatgttcactcccatctcctta 433

                                                                       
Query: 413 gaatttgacctcagcaaagggctgtggggatggatgagtcagcctagaactgcagaatat 472
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gaacttgacctcagcaaagggctgtggggatggatgagtcagcctagaactgcagaatat 373

                            
Query: 473 ttttaaagaggtaattc 489
           |||||||||||||||||
Sbjct: 372 ttttaaagaggtaattc 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)