Query= MSMg01no471_o12.b1 MSMg01no471_o12.b1 CHROMAT_FILE:
MSMg01no471_o12.b1 PHD_FILE: MSMg01no471_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:20 2005
(633 letters)
>mm_chr7_31446418_31447450
Length = 1033
Score = 429 bits (222), Expect = e-124
Identities = 364/494 (73%), Gaps = 127/494 (25%)
Strand = Plus / Minus
Query: 140 accttctggcctccactggtacctgtatgcatgtggtacaccgacatacatttttttaaa 199
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1033 accttctggcctccactggtacctgtatgcatgtggtacaccgacatacattttttaaaa 974
Query: 200 aaatggaggctgagtatgttggtacttgcctgttatcccagcacgtggatgctgaagaag 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 aaatggaggctgagtatgttggtacttgcctgttatcccagcacgtggatgctgaagaag 914
Query: 260 actgtgaatttattggcagtctgagctagtttacacagctcttgctctcacaaggaccta 319
|||||||||||| |||||||||||||||||||||||
Sbjct: 913 actgtgaatttaaaggcagtctgagctagtttacaca----------------------- 877
Query: 320 gctcacaactgcctatactttggcttcagagactctgatgccctctggcctccaatggac 379
|||
Sbjct: 876 ---------------------------------------------------cca------ 874
Query: 380 acctgcatgcatgcacataaactcctatgacccttccaggatttccatctacctatctca 439
|||| |||||||||
Sbjct: 873 ------------------aaac-----------------------------cctatctca 861
Query: 440 ataaaaataaaaaataattttaaaaaagcatctgacagagatgtaggagtcaccccacag 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 ataaaaataaaaaataattttaaaaaagcatctgacagagatgtaggagtcaccccacag 801
Query: 500 acagaaaccaagaagatagagaggcaattccaggagggagagaaccaagtagattcttag 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 acagaaaccaagaagatagagaggcaattccaggagggagagaaccaagtagattcttag 741
Query: 560 tgcttctatgtcagacctgagccacttaaacaaagaaaaatctgtcaaccatctcccagg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgcttctatgtcagacctgagccacttaaacaaagaaaaatctgtcaaccatctcccagg 681
Query: 620 agatgaggagagaa 633
||||||||||||||
Sbjct: 680 agatgaggagagaa 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_o12.g1 MSMg01no471_o12.g1 CHROMAT_FILE:
MSMg01no471_o12.g1 PHD_FILE: MSMg01no471_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:20 2005
(422 letters)
>mm_chr7_31233878_31234696
Length = 819
Score = 601 bits (311), Expect = e-176
Identities = 372/407 (91%), Gaps = 29/407 (7%)
Strand = Plus / Plus
Query: 1 caaagtagggatgtctttgagggaatgtgagggtagggtgggacatcgtgaaaggaagac 60
||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 218 caaagtagggatgtctttgaggg----------tagggtgggacatcgtgaaagga---- 263
Query: 61 ccctgtctggaaggtagcagctgaacaaagagagacttagaggcataaaacacggcagat 120
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 264 ---tgtctggaaggtagcagctgaacaaagagagacttagaggcataaaacatggcagat 320
Query: 121 ggggaaagaagaatccaaggcaaaatgaatcaacaacagaagctgatgttgcagctggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggaaagaagaatccaaggcaaaatgaatcaacaacagaagctgatgttgcagctggtg 380
Query: 181 agctggcccaggaggtgagagtgcagttaaaggcaggtcttttttttgggggggggggg- 239
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 agctggcccaggaggtgagagtgcagttaaaggcaggtcttttt---ggggggggggggt 437
Query: 240 --ggg--gttct--tgacaaggcttctctgtgtagccctggctgtccttcctccatatca 293
||| | || |||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 438 gagggagg--ctaatgacaaggcttctctgtgtatccctggctgtccttccaccatatca 495
Query: 294 taatcaactcgggtcataaagcttggcaaatgcctttacctgatgaaccatctctccctc 353
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 496 taatcaactcaggtcataaagcttggcaaatgcctttacctgatgacccatctctccctc 555
Query: 354 acttgtttgcccttttgattcagttatattatattatattatattat 400
||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 556 acttgtttgcccttttgattcagttttattatattatattatattat 602
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 819
Length adjustment: 9
Effective length of query: 413
Effective length of database: 810
Effective search space: 334530
Effective search space used: 334530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
