BAC Information

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BAC

Clone NameMSMg01-472A24
Chromosome7 (Build37)
Map Location 52,139,776 - 52,140,250
singlet/doubletsinglet
Overlap geneMed25
Upstream geneKlk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1
Downstream geneFuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472A24.T7 (MSMg01no472_a24.b1)MSMg01-472A24.TJ (MSMg01no472_a24.g1)
ACCAG554684AG554685
length748774
length of high quality
(start - end)		475 (73 - 547)415 (78 - 492)
definitionCHROMAT_FILE: MSMg01no472_a24.b1 PHD_FILE: MSMg01no472_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:34 2005CHROMAT_FILE: MSMg01no472_a24.g1 PHD_FILE: MSMg01no472_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAGAGGACC
GCGGAANTCCAGGATATCCGGGTTCCTCAGGCCAGGAGCCCACAGCCCTG
CCCCAGAGCTGCACATCACAACTATGCACCTCACCGTGGAGCTCAGGCCC
CTTGCGGGAGGCTAGGTACCACCTTTCATCTACTGTGAGCACAGCAGCAG
CCTGAGGCTGGGGACGATGAGCCACCTACCAGAGACGGCGCCCCAGGCTG
CGCAGGAGCTGCCAGGACTGGTCCGGGGGCCACGGTGGAGACTAGGCTAG
GCTGTGAGGCAGGAGGTGGCTTTGGAGCTCCAGGGGGCACAGGAGCCAAT
GGGGGTGCTGGGGCCTGGCTGAAGGGGGGCCCCACTCCTGGAGCAGCTTG
CTGGAGAGGGTTGATGGGTGAGACTGTGGGAGAAACCAGCGTGAGTGGGT
AGCTGGGTCAGAATGTAGGGAAGCCCCCTCTGCCTCTTCTAGAACTCACA
GCGTGGGCCCAGCCCGGCCTTCTGGCTCTTGGCAGCCTCCACAGCATTCT
GCGCATGCACCTGAGCAGCACTTAGGTTCCCAGGAACCTGTCCCATGGAA
AAAAATCATGTGCCCCTAGAAATATGGACTTCTGCACCCCGAAGCAAATA
AACCGCCTCTGAAGAACCAGAAGCTTTTGAATCCCCCCCCCCTGAGGCCT
AGTCTCCTCCGGGCCCCCTGAAGCTGCCCCCCCCCATTTATTTTATTA

TTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACTAGGCTGGCCTC
GAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGC
GTGCACCACCATGCCCAGCTCTTTTTTTGTTTTTGTTTTTCTATCTTTAT
TTCTAAATAATTGTTTCATTTTATTTAAGTATATGGATATTTGGCCTGCA
TGACATGTGTGTGTACCACACGCATGCCTGGTGCCATGGATCCCCTGGAA
CTGGAGTTACAGATAGTCATGTTTGCTGGAGTTGAACCTGGGTACCCTAA
AGGAGCACCCAGCGCTTCTAACTACAGAGCTGTTTCTTCAGCTTCCTTAT
TTTTCTTTTATTATTTTTTTTCTTTTTTGAGACAGTTTATCTAAATAGTC
CTTGCTGTCTTGGAGACTAGGTTAATCTTGAACTCACAGAGATCTGCCTG
CCTATACATCCCAAGTGCTGAGATTAAAGGTCTACTCAACTATGCTCCGG
TCTTTATTAATATTAATATTATTAACTATCATAATATTAATAATACTACC
AGCATCCTCATTTTCCTTTTTCTTTTTTATAAAAAAACTAATTTAATATG
ACGGTGGTTTATTCTTATTTCCATAACCTAATAAATTATATATTTCCCCC
TTATTATTTATTTAACCTTCTCTTTCTTTACATCTTTCTTTTCCCAATCC
CCATATTCTACCCGCCCAATGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_a24.b1 MSMg01no472_a24.b1 CHROMAT_FILE:
MSMg01no472_a24.b1 PHD_FILE: MSMg01no472_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:34 2005
         (475 letters)



>mm_chr7_52139576_52140450
          Length = 875

 Score =  903 bits (467), Expect = 0.0
 Identities = 473/475 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcctcaggccaggagcccacagccctgccccagagctgcacatcacaactatgcacctc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ttcctcaggccaggagcccacagccctgccccagagctgcacatcacagctatgcacctc 260

                                                                       
Query: 61  accgtggagctcaggccccttgcgggaggctaggtaccacctttcatctactgtgagcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accgtggagctcaggccccttgcgggaggctaggtaccacctttcatctactgtgagcac 320

                                                                       
Query: 121 agcagcagcctgaggctggggacgatgagccacctaccagagacggcgccccaggctgcg 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 agcagcagcctgaggctggggacgacgagccacctaccagagacggcgccccaggctgcg 380

                                                                       
Query: 181 caggagctgccaggactggtccgggggccacggtggagactaggctaggctgtgaggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggagctgccaggactggtccgggggccacggtggagactaggctaggctgtgaggcag 440

                                                                       
Query: 241 gaggtggctttggagctccagggggcacaggagccaatgggggtgctggggcctggctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggtggctttggagctccagggggcacaggagccaatgggggtgctggggcctggctga 500

                                                                       
Query: 301 aggggggccccactcctggagcagcttgctggagagggttgatgggtgagactgtgggag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggggggccccactcctggagcagcttgctggagagggttgatgggtgagactgtgggag 560

                                                                       
Query: 361 aaaccagcgtgagtgggtagctgggtcagaatgtagggaagccccctctgcctcttctag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaccagcgtgagtgggtagctgggtcagaatgtagggaagccccctctgcctcttctag 620

                                                                  
Query: 421 aactcacagcgtgggcccagcccggccttctggctcttggcagcctccacagcat 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aactcacagcgtgggcccagcccggccttctggctcttggcagcctccacagcat 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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