BAC Information

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BAC

Clone NameMSMg01-472C20
Chromosome7 (Build37)
Map Location 3,981,652 - 3,982,174
singlet/doubletsinglet
Overlap geneLair1
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841
Downstream geneTtyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472C20.T7 (MSMg01no472_c20.b1)MSMg01-472C20.TJ (MSMg01no472_c20.g1)
ACCAG554772AG554773
length864756
length of high quality
(start - end)		143 (87 - 229)545 (75 - 619)
definitionCHROMAT_FILE: MSMg01no472_c20.b1 PHD_FILE: MSMg01no472_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:43 2005CHROMAT_FILE: MSMg01no472_c20.g1 PHD_FILE: MSMg01no472_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCAAGANNNNCNNCCCCNAAAACNANNCCTATTCAAANAGGNACCGCG
NNAATCTCACCTTACGAATACCGAATGGCAAAAAANCACTTGAAAAATGT
TCAACATCCTTAATCATCANGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
AATGCTGGTGAGGATGTGNAGAAAGGGGAACACTCCTCCAATTGTTGNGG
GATTGCAAGCTTTGAACACCACTCCGGAAAATCAACCTGGCGTTCCCCCA
AAAANNGACAACACGAGATCCAACCCCGCAATCAATTCACGAAAACCGCC
ATGTAACCTTAAACCATGAACCTCCCCCAANGGAAAGGTCCGGACCCAAA
ATATTCCGGGGGGTCTAACCCAACCCACCCNAAAACAAAAAAAACCCNNA
AAAACCNCCAAANNNNNACCACTATAGGATTTGGGTTTTTTTTTNTNNNN
NNNTTTTAAAAANNNNNNNNNNNCNNNNNCCAAGTAGTGGGTTGTGTGTT
TGCCTCTCGGGGNNNNNNNAANANAACNNNAAAAANANCNNNNNNNNANA
AATTTATTGTAGGAGGGGGATCTTTTNNNNCNNNNNNNNNNAANACCCNN
CNNNNAANAAACCCCCCCCCCCCCAACCACCCCNATAAAAACTACCCCCN
NCATTTCATTTTTTTTGCGTTGTTGGCCACTTTNNNCNNNNNNNNANNAN
CNNCCNNCNNNNNCCNCNAACNNANTCCCCNACACCCAACAAAACACCCC
CCCCCCCCCACCCCACACCCACACCCCCCCCCACTCCACCATTATTTACT
ATGTTTTTTTTTGT

NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAATAGGCCTGCCTTCATGTGTTACT
TGGCCTTTTCCTGCGCAGCTTTTAATATTACTCTTTGTTCTGTGTTTAGT
TTTTTGATTATTATTATTTTATCCAGAAGCCTTTATTTATGTTTTATCCC
AGAGGCTTCACTTGTTTATCCCAGAGTCTTTTCTGGACCTGTGAACTAGG
CATCATGCACTTTAATTTTTCAAAATTATTTTTAATTAAAATATAATTGC
ATAATATTCCCCATCTCTATTTCCTTAACCCCTTTTATATTCCTCCTTTT
TATTATCCCTCTCAAATCCATGGCCGCCCTCTTTATTATTCACACACACA
CACTCACACAACTTGCTGTTTAATGCTTAGTGTAGTTTATTTGTATGTGC
TTTTAGAGATTACTAAATCATATTGGATAGCCAATTAAGGGCTCATCTCT
GGGGGAAAACTAATTTTACTCTCTTAGCAGTCATTAAATACATTAAATAC
TCTTTATCTAGAATTGGCACCCTGTAAGATCCCTCAGCTAAGCTCAGATA
TCAACTGATGTTTTTGTTCAGGGCATGTTTAAGTAGCCCTAATTTGATGT
ATCATGTGTGTAGTTTCCATGGCATATCAATGTTTGCTCCTCCCTTGTCC
CTGGTTGCTATGTTGCAGGAATTTTACTCTTGTTCCCTGGATCTCCCTTG
TTAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_c20.g1 MSMg01no472_c20.g1 CHROMAT_FILE:
MSMg01no472_c20.g1 PHD_FILE: MSMg01no472_c20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:43 2005
         (545 letters)



>mm_chr7_3981228_3982174
          Length = 947

 Score =  938 bits (485), Expect = 0.0
 Identities = 513/523 (98%), Gaps = 2/523 (0%)
 Strand = Plus / Minus

                                                                       
Query: 25  cttggccttttcctgcgcagcttttaatattactctttgttctgtgtttagttttttgat 84
           ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 947 cttggccttttcctgtgcagcttttaatattattctttgttctgtgtttagttttttgat 888

                                                                       
Query: 85  tattattattttatccagaagcctttatttatgttttatcccagaggcttcacttgttta 144
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 tattattattttatccagaagcctttatttatgttttatcccagaggcttcacttgttta 828

                                                                       
Query: 145 tcccagagtcttttctggacctgtgaactaggcatcatgcactttaatttttcaaaatta 204
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 827 tcccagagtcttttctggacctgtgaactaggcatcatgcaccttaatttttcaaaatta 768

                                                                       
Query: 205 tttttaattaaaatataattgcataatattccccatctctatttccttaaccccttttat 264
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 767 tttttaattaaaatataattgcataatattccccatctctataaccttaaccccttttat 708

                                                                       
Query: 265 attcctcctttttattatccctctcaaatccatggccgccctctttattattcacacaca 324
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 707 attcctcctttttattatccctctcaaatccatggccgccttctttattattcacacaca 648

                                                                       
Query: 325 cacac--tcacacaacttgctgtttaatgcttagtgtagtttatttgtatgtgcttttag 382
           |||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 cacacactcacacaacgtgctgtttaatgcttagtgtagtttatttgtatgtgcttttag 588

                                                                       
Query: 383 agattactaaatcatattggatagccaattaagggctcatctctgggggaaaactaattt 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 agattactaaatcatattggatagccaattaagggctcatctctgggggaaaactaattt 528

                                                                       
Query: 443 tactctcttagcagtcattaaatacattaaatactctttatctagaattggcaccctgta 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tactctcttagcagtcattaaatacattaaatactctttatctagaattggcaccctgta 468

                                                      
Query: 503 agatccctcagctaagctcagatatcaactgatgtttttgttc 545
           |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 467 agatccttcagctaagctcagatatcaactgatgtttttgttc 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 947
Length adjustment: 10
Effective length of query: 535
Effective length of database: 937
Effective search space:   501295
Effective search space used:   501295
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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