BAC Information

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BAC

Clone NameMSMg01-472I19
Chromosome7 (Build37)
Map Location 97,976,955 - 97,977,056
singlet/doubletsinglet
Overlap genenone
Upstream geneMe3, Ccdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik, LOC666689, LOC621816, LOC100039943
Downstream geneDlg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472I19.T7 (MSMg01no472_i19.b1)MSMg01-472I19.TJ (MSMg01no472_i19.g1)
ACCAG555056AG555057
length829638
length of high quality
(start - end)
107 (45 - 151)87 (78 - 164)
definitionCHROMAT_FILE: MSMg01no472_i19.b1 PHD_FILE: MSMg01no472_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:13 2005CHROMAT_FILE: MSMg01no472_i19.g1 PHD_FILE: MSMg01no472_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCTAAATTTGCGCCGCTAAACAACTCCTATTCCCAGAGGATCCGCGG
AATTCCATGTTTTCTGAAAACTGAGCCTAGCACCAGGCATTCACTGTGAT
ACCTCTTACATACTCAGCCATATAACAGGCTACTGCCTTCTCTGTCACCC
ACTGTGATCATAGCTTCACAAAAATGTTGNAAAAAACANNACNNCNCCTC
TCCTGGNATTTTCCTTCAAATTTCAGCATAATATCCAGTTCTTTGTAACC
NCTTAACTACCCGAAATACTCTCTNNCCAGGGCTAGGTGACTACTGGGNN
NNNCTCCTTTAAACGGGGCAAAGGAAACATCTTTTTATATAAATGNNNNN
GCAGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGNCCTGCGCCCCCACC
ACAAAAAACCNNNGGGGNNNNNNNNCCGGNNCCACCAAAAATATTTATTA
ATATAAAGGGGGAATACTTTAAAAAAGGGGGGGGGCCTNNNANNNANNAA
NNAACANAAAAAAAAAAAAGAGATAGGGGAGGANCCTANNNNAAAAANAA
NNNANNANNNNNNNNNNNACCCAAAAANANAAAAATAAAATAATAGGGGG
GGGCTGGGGNNGGGGAATATCTTCCCCCNNNNNNNCGNNNNTTAAATCAT
CCATTAAAAAAATTAAATACCCCACCCTCCCTATTCTTTCGNNNCCCCCC
CCCCCTTTTATTTTATATTTTATTTATTCCCTTTAAATTTCATTACATTA
ATTATACATAACCAACCACTTTTCATCCCCTTCCCTTTTTTTTACCTCCA
ACCAAATAAGTTTCTTTCTATTTGTTTTG
TAATTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTATAAAAGGACTTTTTGAAT
CCAGTGAAGTATTGGTGATTTATANNTCCTCTGTATTAATTTTTTTTCTA
CATTTATTAGTTTTTTAGGTTATTTGAAAGGCCAATTCCCTTTTGGAAAT
TCCCTGGGAATGAAGACCACCTTGCTAAAAAAAAAAAAAAACTNATTTTT
TTTTTTTTTAAAAAGGGGGCGGGGTGGGAACTTTTTGGTCCAAAAAAAAA
AAATTTTTTTTTTTTTAACAAAAAAAAAATTTTGTGTCGGCGCCCTCCAA
CAACNCCTCCCCCTCCCNCGGGGGGGGGGAAAAAAATATGAGACCCCCCC
CTTTTTTTTCTTTTAGGGACGCCCCCTTTTTTTTATTTATCTCCCCCTCC
CCCTCCCCNNNNNNTNATAAGNNNGGATAAATATGTGTGTTTTAGATTGG
GNNNCTGTTCCTCCCCCTTTTTCCCTACCCTTTTCCTTCCCTTTCTCTTT
TCCGNNGNNACCCAACCTCCGCTAGAATGATGATTGTTGTTTCTCCGTCC
CGGCCCCTTTNCTCCTCCTCCGCTCCTTTTTATACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_i19.b1 MSMg01no472_i19.b1 CHROMAT_FILE:
MSMg01no472_i19.b1 PHD_FILE: MSMg01no472_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:13 2005
         (107 letters)



>mm_chr7_97976750_97977256
          Length = 507

 Score =  182 bits (94), Expect = 6e-51
 Identities = 100/102 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccatgttttctgaaaactgagcctagcaccaggcattcactgtgatacctcttac 65
           |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 206 gaattccatggtttctgaaaactgagcctagcaccaggcattcactgtgataactcttac 265

                                                     
Query: 66  atactcagccatataacaggctactgccttctctgtcaccca 107
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atactcagccatataacaggctactgccttctctgtcaccca 307


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 107
Length of database: 507
Length adjustment: 8
Effective length of query: 99
Effective length of database: 499
Effective search space:    49401
Effective search space used:    49401
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)