BAC Information

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BAC

Clone NameMSMg01-472L12
Chromosome7 (Build37)
Map Location 80,287,744 - 80,454,904
singlet/doubletdoublet
Overlap genenone
Upstream geneMctp2, LOC100042880, LOC233391, LOC665570, LOC100042029, EG384643, LOC625243
Downstream gene4930429H19Rik, LOC665588, Rgma, Chd2, 1810026B05Rik, EG665610, LOC244061, A830073O21Rik, St8sia2, LOC100042127, LOC100042140, LOC546979, Slco3a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472L12.T7 (MSMg01no472_l12.b1)MSMg01-472L12.TJ (MSMg01no472_l12.g1)
ACCAG555186AG555187
length756751
length of high quality
(start - end)
259 (327 - 585)540 (73 - 612)
definitionCHROMAT_FILE: MSMg01no472_l12.b1 PHD_FILE: MSMg01no472_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:27 2005CHROMAT_FILE: MSMg01no472_l12.g1 PHD_FILE: MSMg01no472_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,287,744 - 80,288,002)(80,454,365 - 80,454,904)
sequence
NCTTATAATTTGCGGCCGCTAAACGAATCCTATTTCTAGACGGTCCGCGG
AATTCTCCACTTACTTATTAAGTTGCTTACAATTACCACCCTAGGCCTTG
TTTTATAACCAGAACATGCCCAGTGGTCTTAAAGGGACAGGGGCCTCGTT
GGTCAGTCCTAAGAGATCGTTGGTAGTGGGAGAAAAGTTCCAGAGTTAGA
CAGACTACTGCTCTGGCAACTGTCATCCCTGACTCTTAGCAGCAGCAACT
ACACAAAAGTCTCTCGGGTCAGGGCTCCCAGCATATCCCAGGCTGGTGTG
ATAGCTCTTAGGCTCTGGTTTGTTGGGACCCTCGGCCCCTTAGGACTTTT
TGGACCCCTGGAACTTTCCATCATCATTCTTTTGTCAAAGGTCTTCAAGT
GTCCCACCTTCAGCTCTGTTCGTTCTCTGCCCTCTTTTTTGCCTTCTCCA
TATTTTCACCATCTATCGTCCCTGGGGCCTGTTCCCTCCCCTGCCTCTAT
AGCAGATCACCTGCATTCTCAATAATCCAGACTCCCACTGAGGCAACAGC
CCCTACTGCTATCTTCTCCTCTTTGGGTTACCAGCTCATGCCACCGTGAT
AAAATGAGTATCTTAGGAAAGACCATTACGGAGAAAACTTTTGATTGGCC
CTTTTGATGCCACACCATAGGGTAGGATAAGAGGTGTCTTCCTAGGTGAT
TCCAATACCCTGCGTTTTTATACCCCGAATTGGGTCCCGGGGTGTTATGG
TTTGTA
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAAAGACGGAGAGACATCTAGGTAAAGG
GAGAAAAGGGGACAGAGATACAGACACACACTGAACGCGAACCTTTGTGT
TTTGGAGATATGCTAGGACGCCCTGGCTTTTCAGTGACTGCTTATTTTCC
AATCGATGGAAAGTCAAAGCCATTGGATGCTGCCTTCTCCCTGATGTTAT
CAGGACACACTTGCTCACACTTCCTACCAGCCTGGCTTCTCTTCAGATGA
GGAGGACATAACTCTTCCTTGAAGAGTCCATAGCTCCACGCCAGAGTCAG
GTATGGCTACAGGAAATAATAACACACTGTCAGATGCCCTAGGTAAACTG
TGGCTACATCTTGGCTTGGCATGCCTCCAGACTGTTGTTTCAAAAGGCAA
TTCCCCTGCACCAAACAAGCTCAAAGCTCTCTGCTGGAATTACCGATGGT
TAAATTGTGTTGTAGCTAGATTAGGGTTCCCACCCATAACAAATCACCTA
GGAAGTAAGTTTGCAGTAATGTGTTTGGCCTACGAGGAACTGCTGGGTCT
GGCCGCATTGTATTCTGGATGTGTATGACCTGGAATCTGTGAGAACATAG
GCATGACCACTTTCGTATCAATCCGTATTCCACGAGGACTGCTGGGAGCA
CTTATGGTTTTCCCTAAGAGTTGCCTCTTACCCCCTGTTAGCTTCTTTGC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_l12.b1 MSMg01no472_l12.b1 CHROMAT_FILE:
MSMg01no472_l12.b1 PHD_FILE: MSMg01no472_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:27 2005
         (259 letters)



>mm_chr7_80287544_80288202
          Length = 659

 Score =  485 bits (251), Expect = e-142
 Identities = 257/259 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaccctcggccccttaggactttttggacccctggaactttccatcatcattcttttgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaccctcggccccttaggactttttggacccctggaactttccatcatcattcttttgtc 260

                                                                       
Query: 61  aaaggtcttcaagtgtcccaccttcagctctgttcgttctctgccctcttttttgccttc 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 aaaggtcttcaagtgtcccaccttcagctctgttggttctctgccctcttttttgccttc 320

                                                                       
Query: 121 tccatattttcaccatctatcgtccctggggcctgttccctcccctgcctctatagcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccatattttcaccatctatcgtccctggggcctgttccctcccctgcctctatagcaga 380

                                                                       
Query: 181 tcacctgcattctcaataatccagactcccactgaggcaacagcccctactgctatcttc 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcgcctgcattctcaataatccagactcccactgaggcaacagcccctactgctatcttc 440

                              
Query: 241 tcctctttgggttaccagc 259
           |||||||||||||||||||
Sbjct: 441 tcctctttgggttaccagc 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no472_l12.g1 MSMg01no472_l12.g1 CHROMAT_FILE:
MSMg01no472_l12.g1 PHD_FILE: MSMg01no472_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:27 2005
         (540 letters)



>mm_chr7_80454165_80455104
          Length = 940

 Score =  975 bits (504), Expect = 0.0
 Identities = 531/540 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagacggagagacatctaggtaaagggagaaaaggggacagagatacagacacacact 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 740 caaagacggagagacatctaggtaaagggagaaaaggggacagagatacagacacatact 681

                                                                       
Query: 61  gaacgcgaacctttgtgttttggagatatgctaggacgccctggcttttcagtgactgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaacgcgaacctttgtgttttggagatatgctaggacgccctggcttttcagtgactgct 621

                                                                       
Query: 121 tattttccaatcgatggaaagtcaaagccattggatgctgccttctccctgatgttatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tattttccaatcgatggaaagtcaaagccattggatgctgccttctccctgatgttatca 561

                                                                       
Query: 181 ggacacacttgctcacacttcctaccagcctggcttctcttcagatgaggaggacataac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggacacacttgctcacacttcctaccagcctggcttctcttcagatgaggaggacataac 501

                                                                       
Query: 241 tcttccttgaagagtccatagctccacgccagagtcaggtatggctacaggaaataataa 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcttccttgcagagtccatagctccacgccagagtcaggtatggctacaggaaataataa 441

                                                                       
Query: 301 cacactgtcagatgccctaggtaaactgtggctacatcttggcttggcatgcctccagac 360
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cacactgtctgatgccctaggtaaactgtggctacatcttggcttggcatgcctccagac 381

                                                                       
Query: 361 tgttgtttcaaaaggcaattcccctgcaccaaacaagctcaaagctctctgctggaatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgttgtttcaaaaggcaattcccctgcaccaaacaagctcaaagctctctgctggaatta 321

                                                                       
Query: 421 ccgatggttaaattgtgttgtagctagattagggttcccacccataacaaatcacctagg 480
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 320 ccgatggttaaattgagttgtagctagattagggttcccacccataacaaatcacctggg 261

                                                                       
Query: 481 aagtaagtttgcagtaatgtgtttggcctacgaggaactgctgggtctggccgcattgta 540
           ||| |||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 260 aagcaagtttgcagtagtgtgtttggcctacgaggaactgctgggcctggctgcattgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)