BAC Information

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BAC

Clone NameMSMg01-472M16
Chromosome7 (Build37)
Map Location 125,384,588 - 125,384,741
singlet/doubletsinglet
Overlap gene2610207I05Rik
Upstream geneXylt1, LOC669758, Rps15a, Arl6ip1
Downstream geneLOC100043339, Syt17, LOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5, Mir16, 6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b, Gpr139
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472M16.T7 (MSMg01no472_m16.b1)MSMg01-472M16.TJ (MSMg01no472_m16.g1)
ACCAG555242AG555243
length778758
length of high quality
(start - end)
157 (324 - 480)243 (72 - 314)
definitionCHROMAT_FILE: MSMg01no472_m16.b1 PHD_FILE: MSMg01no472_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:32 2005CHROMAT_FILE: MSMg01no472_m16.g1 PHD_FILE: MSMg01no472_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTGGTTACAGAGACGACTATGATGAGGTGCACATGTGGGTTTA
TGGAGTACAAGGCAGGAGTACTTGCTTTCTAGAGGAAACAGGAATATACA
CATACCTCATAGCAAACTTGGTTTATTTGTAACATGGTCAGGATTGATAT
GCTAAATAGCCAGTGGAAAAAAATTCAAGTTTGTAGGTCATAATTTTCAT
AGTAAAAGTTGAAGTCATTCTCTCTCAGAAAGATGAATAGCTAATGATAG
AATGGAGACACCCCCTCCTCCTACACACACACCTTGGCCAAGTGCTTTTT
CCAAATATTTTCTCTATGTACTTACATAGAGACTATAGTTTATTCAAATA
TTAAAAAAAATCTTTTATTTATCTGTGTGGTCATGTCTGCCACAATGAGC
CATGAGTGGGTGAGTGAATAGAGATCAGAGGACCACACATAGTCTGTTTT
CTTTTTCTGCCATGTGGATTCTGGCAATTTAACTCAGGTCATCTTGCTTG
GCACCAAGTGCTGAGGAATCATCCTGCTGAACCTTGTATCTTAAAAACAA
TAAAACATTTCCAACTTTTAATCGGTATTTATCCTGTGGGCCCATATTTT
ATTTTTGTTCTTCCCCTGCGGAGGTGAAATTAATGCTTATAATCTCTCGC
GCTCCCTATTCCATTATTTTTTTCCTCTGACCTCTCTCTTCCTTCCGTTT
TTTCTCTCTCCTGCTTTTTCTTTGTCCN
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGCCACGAGGAATTCCTCTTATTGATTGTTATAAGTAAAC
GGCTATGGTACAATTTATTTACTTAGTTAATTTTCCTAAGGCAGAATCTT
TTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCT
GTCCTGAAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCG
CCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCC
CAATCCTAAGGCATTATTTTTTTCTTTGGCTGCCTCTACTCATCATCCTT
CTGTCTCAGTACTGTGAAGTCCTAGGACTACAGGCCTGAGCCACAATACC
CTGGCTGACAGCTAAGACTCTTGACCTCCCTCGGGCTGAGCGCACAGGAA
GGTGCCCCCACAGTGAAAAACTGTGTTCCTTTATGTGTATCAGTGTTGGG
TCTACATCTACACACCACATACATGCAGTGCCCGATACATGCAGAGGCCA
GGAGAGAGCAATAAAGCCCCTGGGCCTGGAGTTATATACAGGTGTTTAAT
ACTGGGAAATAAATTCATGTCCCCTAAAAAAAAACAAGGACTCTTATTTT
TTTATAACCCTCCAAGCCCCCAAAAGAATAAATTTTTAAGCCCCCCTTTT
CATAACACGAATATTGTCCGGCATAAAAAACGGCCCTCCGTCCCTATTCC
CTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_m16.b1 MSMg01no472_m16.b1 CHROMAT_FILE:
MSMg01no472_m16.b1 PHD_FILE: MSMg01no472_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:32 2005
         (157 letters)



>mm_chr7_125384385_125384941
          Length = 557

 Score =  298 bits (154), Expect = 1e-85
 Identities = 154/154 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   acacaccttggccaagtgctttttccaaatattttctctatgtacttacatagagactat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 acacaccttggccaagtgctttttccaaatattttctctatgtacttacatagagactat 298

                                                                       
Query: 64  agtttattcaaatattaaaaaaaatcttttatttatctgtgtggtcatgtctgccacaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 agtttattcaaatattaaaaaaaatcttttatttatctgtgtggtcatgtctgccacaat 238

                                             
Query: 124 gagccatgagtgggtgagtgaatagagatcagag 157
           ||||||||||||||||||||||||||||||||||
Sbjct: 237 gagccatgagtgggtgagtgaatagagatcagag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 557
Length adjustment: 8
Effective length of query: 149
Effective length of database: 549
Effective search space:    81801
Effective search space used:    81801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)