BAC Information

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BAC

Clone NameMSMg01-472N16
Chromosome7 (Build37)
Map Location 133,307,153 - 133,307,555
singlet/doubletsinglet
Overlap geneXpo6
Upstream geneLOC670828, 4933440M02Rik, LOC100043014, Jmjd5, Nsmce1, EG244214, Il4ra, Il21r, Gtf3c1, D430042O09Rik, Gsg1l
Downstream geneSbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472N16.T7 (MSMg01no472_n16.b1)MSMg01-472N16.TJ (MSMg01no472_n16.g1)
ACCAG555290AG555291
length754777
length of high quality
(start - end)
487 (69 - 555)398 (78 - 475)
definitionCHROMAT_FILE: MSMg01no472_n16.b1 PHD_FILE: MSMg01no472_n16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:37 2005CHROMAT_FILE: MSMg01no472_n16.g1 PHD_FILE: MSMg01no472_n16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGTATTACCGTTATCTATTCAGTAACATTCAAATTTACTTCT
AGTAGAGAAGGTGAAACTAATTAGGCATTACAAACAACGGAGCCAGAATA
GCTCAGGGCTGATCTGCAGAGTGTTTACTTGAGACAATAGTCAGTCTTAG
CCAGACAAGGGAATACACAATGGCCTAGCAAATAGGTGGGTTTACCATGA
AAGAGTTAGGGAATCCCCCTGAGACAGGTTTCTTCACTAGGCCCAAAGAA
ACAGCATAAATCAGGTATTTACTAAGAACCCCTGGTGGTGGGCTTAACAA
TAGACTAGCATTACACCTGGCTCCCTTCTTAGTGGCAGTGGCCTGGTCCC
CACCTTCTTTTGGTGTATACATTCCTTATGTTTTGTGTCACTGTAACTCA
GCAGATGTATATGGCCTGGCTTCTTGTTATTCTTCTGTATAAAAAGTTCG
ATGCTCGACCTGACAAATTACATTCAGATTCTACACAATCCTGTGCTGAG
TCCGTGTCTGTCTGGCATTCATTTCGCTGACTCCTTGTCCACCTGCAACT
AGAGACCTGTTCTATGTAGACCAGGGACCAAGAGGGTCTGCGGCCCTGAG
TGGTTGCCTTTTCCCCCGTATGCGCACACTAGCATGCGTAAGGAATACAT
GCCTGGTCCTTATAGGGTCAGGGGTTTAACTTAAGGAAAAATAGGTGGCT
GGTA
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGGCAATTCCAATATACTCAG
AAGCAGCCCAAGAAAGCCAGTAGTTGACTATAATCTCAGCAATCTGCAGG
TGGGAATTCACAAGTCTACCCAAGAACCAATCAGGAAAAAAAAGGGGAAA
GAGAAAGGAAAAAAGAAGGACAGAGGAAGGAGAGGAGGGAGGGAGGGAGC
TGTTCTCTATAAAAACCTCTCTTGAAAGTTAAAACTTCTAAAAACACCCT
CCACATTTTCTCCATTCTATTCTATTTTTATTATTTCTAACACATTCAAA
TAATGTCTGCCTTGGTAATAACTTTTGGCTAAAATAAAGTAGGAGAGACA
CCCTCTTTAAGGCTCTCTGTGTGGATTATTTCTGGGATGTCAACCCTACC
CTGAGATTTTTTTTTTCCTTCCTTGGACCTTTTTCTTTTCTTTCTCTATT
TTCTACTGAGCACTATTATAGCGCGCGTGCGTGTGTGTGTTCCTGCTTGT
TTTATTTTTCTTTTTTCTTTCCTTTTTCTCTCTTTTTTCCCTTGTTTCGT
TCCTTCTTTTTTGCTCCTTCTCTCTTTTTATACTTTCGTCTGCACCTCCG
CTTCCTTTTTTTTTGTCTACTCCCCCTCCTATTTTCCTCCCTTTATCCGG
TATTTTGTATTACCATCTCTTTTCTTTTCATCCTTTTATTCATATCTCGT
TGTTATATCGCTCGTTTTCTGTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_n16.g1 MSMg01no472_n16.g1 CHROMAT_FILE:
MSMg01no472_n16.g1 PHD_FILE: MSMg01no472_n16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:38 2005
         (398 letters)



>mm_chr7_133306958_133307755
          Length = 798

 Score =  708 bits (366), Expect = 0.0
 Identities = 393/404 (97%), Gaps = 7/404 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagggcaattccaatatactcagaagcagcccaagaaagccagtagttgactataatctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 aagggcaattccaatatactcagaagcagcccaagaaagccagtagttgactataatctc 255

                                                                       
Query: 61  agcaatctgcaggtgggaattcacaagtctacccaagaaccaatcaggaaaaaaaa--gg 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 256 agcaatctgcaggtgggaattcacaagtctacccaagaaccaatcaggaaaaaaaaaagg 315

                                                                       
Query: 119 ggaaagagaaaggaaaaaagaaggacagaggaaggagaggagggagggagggagctgttc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 316 ggaaagagaaaggaaaaaagaaggacagaggaaggagaggagggagggagggagctgctc 375

                                                                       
Query: 179 tctataaaaac---ctctcttgaaagttaaaacttctaaaaacaccctccacattttctc 235
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tctataaaaacaacctctcttgaaagttaaaacttctaaaaacaccctccacattttctc 435

                                                                       
Query: 236 cattctattctat-ttttattatttctaacacattcaaataatgtctgccttggtaataa 294
           |||||||| | |  |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 436 cattctatacaaaattttattatttctaacacattcaaataatgtctgccttggta-taa 494

                                                                       
Query: 295 cttttggctaaaataaagtaggagagacaccctctttaaggctctctgtgtggattattt 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cttttggctaaaataaagtaggagagacaccctctttaaggctctctgtgtggattattt 554

                                                       
Query: 355 ctgggatgtcaaccctaccctgagattttttttttccttccttg 398
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ctgggatgtcaaccctaccctgagattttttttttccttccttg 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)