Query= MSMg01no473_l05.b1 MSMg01no473_l05.b1 CHROMAT_FILE:
MSMg01no473_l05.b1 PHD_FILE: MSMg01no473_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:53 2005
(572 letters)
>mm_chr7_102628333_102629304
Length = 972
Score = 1091 bits (564), Expect = 0.0
Identities = 570/572 (99%)
Strand = Plus / Plus
Query: 1 ccctggtagaaaactgaagagttgattccctgaggcagaattgttttaaaactaaaatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccctggtagaaaactgaagagttgattccctgaggcagaattgttttaaaactaaaatta 260
Query: 61 ttgtttaaagctcatcctgccaatcacatatcagaagtaaatcataaacatgggcaaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtttaaagctcatcctgccaatcacatatcagaagtaaatcataaacatgggcaaagg 320
Query: 121 tttgagtttctgatatgtttacaggccccataactattgtataatgaggcaattttatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgagtttctgatatgtttacaggccccataactattgtataatgaggcaattttatgt 380
Query: 181 aaatctcttcagaattagatctggacatttgcaaagggcagtgtcacccattggaaatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatctcttcagaattagatctggacatttgcaaagggcagtgtcacccattggaaatgt 440
Query: 241 agcaatgagcctcttttctgtttctttggcgttctttgtcatggggcaatttgcatgaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcaatgagcctcttttctgtttctttggcgttctttgtcatggggcaatttgcatgaaa 500
Query: 301 ataggattctgattactcccctgtttctcaggcgttgtttctttcttcagaactgaaagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataggattctgattactcccctgtttctcaggcgttgtttctttcttcagaactgaaagt 560
Query: 361 catccagtgacaggccagcttccggcattcataattaaaaataagtaagaacttgaaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catccagtgacaggccagcttccggcattcataattaaaaataagtaagaacttgaaaga 620
Query: 421 gcccactgcaattagaggaataacctctgcgtcctgggaatgaaggagtcaaccagctct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 gcccactgcaattagaggaataacctctgcgtcctgggaatgaaggagtcaaccatctct 680
Query: 481 gtaaccatgtcgtatccattgtgaccaggggaacaaaggagaaggtgcagagggcaaagg 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtaaccatgtcgtatccattgtgaccaggggaacaaaggagaaggtgcagagggcaaagt 740
Query: 541 gccattgggagaagaaaggctggatcctgagg 572
||||||||||||||||||||||||||||||||
Sbjct: 741 gccattgggagaagaaaggctggatcctgagg 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no473_l05.g1 MSMg01no473_l05.g1 CHROMAT_FILE:
MSMg01no473_l05.g1 PHD_FILE: MSMg01no473_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:53 2005
(540 letters)
>mm_chr7_102791994_102792932
Length = 939
Score = 951 bits (492), Expect = 0.0
Identities = 528/544 (97%), Gaps = 9/544 (1%)
Strand = Plus / Minus
Query: 1 tactaatcatggttggttgagcatcgtattgaggaaatgaaggaccttacccaactatct 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 739 tactaatcatggttggttgagcatcgtattgaggaaatgaaggacctcacccaactatct 680
Query: 61 gggggatggtcactgtacttccattgctgtagatgattaatatcttggggacatatctgt 120
|||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 679 gggggatgatcactgtacttgcattgctgtagatgattaatattttggggacatatctgt 620
Query: 121 cactatcctgttccattttcacaattaatgaatgaagaatacaggaagctagctttactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cactatcctgttccattttcacaattaatgaatgaagaatacaggaagctagctttactg 560
Query: 181 gttctaccctgagttctatcagagagtaagtatttcttgtctggtactgatttaaattac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gttctaccctgagttctatcagagagtaagtatttcttgtctggtactgatttaaattac 500
Query: 241 cttgcaaatca----ttttcattacaaacaaagtccttttaatagctattatattgccac 296
||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 499 cttgcaaatcaacac----cattacaaacaaagtccttttaatagctattatattcccac 444
Query: 297 tttactagtaaaaaaaaatgctcagtaagccaagtctgagcccatctccttaagcaatga 356
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 443 tttactagt-aaaaaaaatgctcagtaagccaagtctgagcccatctccttacgcaatga 385
Query: 357 gtggatttttgctgacatccctactccgatagataggctgacaattttgagatataagaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtggatttttgctgacatccctactccgatagataggctgacaattttgagatataagaa 325
Query: 417 agtcccagaacttcttcaaagtcaagaatgcactcaattaacacaggatgctttcagaca 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtcccagaacttcttcaaagtcaagaatgcactcaattaacacaggatgctttcagacg 265
Query: 477 gaagactggacttccattaacacaagaacagcttatcaggcaaccttccttctttactat 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaagactggacttccattaacacaagaacagcttatcaggcaaccttccttctttactat 205
Query: 537 cctg 540
||||
Sbjct: 204 cctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 939
Length adjustment: 10
Effective length of query: 530
Effective length of database: 929
Effective search space: 492370
Effective search space used: 492370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
