Query= MSMg01no473_p22.b1 MSMg01no473_p22.b1 CHROMAT_FILE:
MSMg01no473_p22.b1 PHD_FILE: MSMg01no473_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:17 2005
(489 letters)
>mm_chr7_12855196_12856084
Length = 889
Score = 841 bits (435), Expect = 0.0
Identities = 469/481 (97%), Gaps = 3/481 (0%)
Strand = Plus / Plus
Query: 11 gaattccttttctctc--cctgcttcacttgaaaccacaaattttcctcctttccttctt 68
|||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 210 gaattccttttctc-caacctgcttcacttgaaaccacaaattttactcctttccttctt 268
Query: 69 actgtcattgtggaatcaattattggggagcatttgcccttttggtctctctattgggat 128
||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||
Sbjct: 269 actgtcattgtggaatcaattattgggaagcatttgctcttttggtctttctattgggat 328
Query: 129 aacatggcattacacagcttctatcactagccattatcatatttacttgcttctgtttgg 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aacatggcattacacagcttctatcactagccattatcatatttacttgcttctgtttgg 388
Query: 189 agtatatttcccaagtctgaaagaggcaagtgaaatggctcagggcctaatagccattgc 248
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 389 agtatatttcccaagtctgaaagaggcaagtgaaatggctcagggcctaatagccagtgc 448
Query: 249 ctcccaatctgagaatctgaatttcatatgagagacctacaaggtgaaggggaggaagaa 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ctcccaatctgagaatctgaatttcatatgagagacctacaaggtgaaggggaggaagaa 508
Query: 309 agaccttctcttaactgcaaggcagaattcagggttggaataatctcggcagtgtccaat 368
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 509 aggccttctcttaactgcaaggcagaattcggggttggaataatctcggcagtgtccaat 568
Query: 369 tctaggtcagtgacttgggctcaaagtactctctgatttgaagccattttggtgagaata 428
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tctaggtcagtgacttgggctgaaagtactctctgatttgaagccattttggtgagaata 628
Query: 429 ctcagaaagattcaactatggcagtttggtatctgttttgcaactttctctctttcaaca 488
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ctcggaaagattcaactatggcagtttggtatctgttttgcaactttctctctttcaaca 688
Query: 489 a 489
|
Sbjct: 689 a 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no473_p22.g1 MSMg01no473_p22.g1 CHROMAT_FILE:
MSMg01no473_p22.g1 PHD_FILE: MSMg01no473_p22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:17 2005
(476 letters)
>mm_chr7_13034739_13035614
Length = 876
Score = 681 bits (352), Expect = 0.0
Identities = 409/428 (95%)
Strand = Plus / Minus
Query: 49 ggaagagaaaatgggaaataatcttgaacatatttgtacaggaaaaattacctgaacaga 108
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 876 ggaagagaaaatgggaaataatcttgaacatatttgcacaggaaaaattacctgaacaga 817
Query: 109 acatcaatggctcaggctttaagatcaacagctgacaaatgggatttcgtgaaatcaaat 168
||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||| |||||
Sbjct: 816 acaccaatggctcaggctttaagatcaacagctgacaagtgggaattcatgaaaccaaat 757
Query: 169 gacactgttaatgggataaaatggcaacatacagattgggaaaagaatctcatgaaccct 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gacactgttaatgggataaaatggcaacatacagattgggaaaagaatctcatgaaccct 697
Query: 229 acatctgatagaaggctaatgacagcttcagggagtgcacacaggagatgctcaaagtag 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 acatctgatagaaggctaatgacagcttcagggagtgcacacaggagatgctcaaagtag 637
Query: 289 actggctagcaggatgagccatatcaataacttctgagtttgagtgaggcaccatgtatg 348
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 636 actggctagcaggatgagccataacaataacttctgggtttgagtgaggcaccatgtatg 577
Query: 349 aaagaataaagtagaatagtgattaaagggtaatttctcatatcatcttcagaccttccc 408
|||||||| |||||| ||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 576 aaagaatatggtagaagagtgattgaagggtaatttctcatatcatcctcagaccttccc 517
Query: 409 acatgtatgtatacacctgtgaatatcctccacatgggcctgaatgcctacacagatatg 468
||||||||| | |||||||||| ||||||||||||||||| |||||||| |||| |||||
Sbjct: 516 acatgtatgcacacacctgtgactatcctccacatgggccggaatgcctgcacacatatg 457
Query: 469 attctaca 476
||||||||
Sbjct: 456 attctaca 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
