BAC Information

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BAC

Clone NameMSMg01-474D07
Chromosome7 (Build37)
Map Location 137,562,831 - 137,563,376
singlet/doubletsinglet
Overlap geneAte1
Upstream geneBrwd2, LOC100043150, Fgfr2, LOC546005
Downstream geneLOC100043163, Nsmce4a, Tacc2, LOC619876, Btbd16, EG434249, Plekha1, Htra1, Dmbt1, 4933402N03Rik, 5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474D07.T7 (MSMg01no474_d07.b1)MSMg01-474D07.TJ (MSMg01no474_d07.g1)
ACCAG556322AG556323
length736724
length of high quality
(start - end)
510 (76 - 585)547 (69 - 615)
definitionCHROMAT_FILE: MSMg01no474_d07.b1 PHD_FILE: MSMg01no474_d07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:34 2005CHROMAT_FILE: MSMg01no474_d07.g1 PHD_FILE: MSMg01no474_d07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAGGATGCC
GCGGAATTCAAAACTGCTTGCCTCTGCAAGACACTGGTTGGAACAAAGGT
AGTCACACACCAGNGAGAGAGGATTTGAAAAGAGAAAAAAAGGACTGCTA
TCCAAAATATACAATGAGCTCTTGAAACTCAACAATAAGAAAACAAACAA
CCCAATTAAAAAATAAGCCAAAGCCTTTGTCAGGCACTCACCAAAGTGAG
TGGAGATAGCAATCAGGCACATAAAAAGATGCTTCCCATCTTTAGTCATA
GGGAGAAATGCATTCTAGAATGGCAAAATTACCCATAGCACTGGCATCAC
AAAATGGTACCAAGGATGCCAAGCAAGGGACACTCCCGGTCATGGATGGT
GGCAACCGAGAATGTCATGGCTGCTTTGAAGAGTGGTTTGGAAAGCTTCC
AATGACTCTGAACTTACCACAGCATTTAATTGTCATGTTCCAGGGGGGAA
AGAGGAAATGTACAGCTAAAGAAGCCCACACCTAGTTTACAGCATCTCGC
TACTTGTGACTGCCANACCTAGGCAAAAGCTAAGAGAGATATCTTCCAGT
GGGGGCTGCATAAACCATGTATACACAAACCAGAGGGTGCTATTCAGCAC
TAAGAAAAAATTAGCTGAAGCTCTACGGAAAAATCAGAATAAGCTAATGC
GCAGCACTAGAGGGAAGACGCCCATCTGAAAAGCCT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCGCGAAATTCTAGAATATTTAAGCAAAATGGAGAGTCTG
CAAGTGGAGTGATAAAAGATTAGATTTATCAGAGAGTAAAATCTAATATA
AAGATTTAATATTGAAAACTATGTGGCTCTGGCACATGGCAAGCTTAGAA
CTCATTATATAATAGGAAGAAACAATCACTAGGCGAAGTTAAGAGGATTC
AAAAAATCATGTTGAGGCTATTGAGTAAATACAAGAGAAATTAGGTTGGA
TCTTTCTATATACTATTATAAATTCTTATACTGGATTATAAAAATTTATA
TATCTGCACTAAATTTTAACCTGTATATAAAATTTGAATTTTAATATTCA
GAAAAAAAGACATTTCAAATTTTGATTAAGTTTAAGGAAAATTAAAGCTT
TGGTTTTTCTGAAAAAAATTCACTAATGCTTTCTTATAGTTTGTTTTTTA
TCACTATTACTTAAGTATTATCTTTCTTAACTGTTATTCATGAATGAATG
ATTTATTTATTCCAGCAAATATTGTGTGGTGTTATACACAGTTCTACATA
TTTTAATAAAGTATATTTTTGTTGTTTTTCTTGTTTGTATGTTTTCCAGA
CAGGGCTTCTCTGTATAAAAAAGTTCTGGCTGCCCTGAACTCCCTTTGGA
AGACAGGCTGGCTTTTGACTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_d07.g1 MSMg01no474_d07.g1 CHROMAT_FILE:
MSMg01no474_d07.g1 PHD_FILE: MSMg01no474_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:34 2005
         (547 letters)



>mm_chr7_137562631_137563576
          Length = 946

 Score = 1004 bits (519), Expect = 0.0
 Identities = 540/547 (98%), Gaps = 1/547 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctagaatatttaagcaaaatggagagtctgcaagtggagtgataaaagattagattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ttctagaatatttaagcaaaatggagagtctgcaagtggagtgataaaagattagattta 687

                                                                       
Query: 61  tcagagagtaaaatctaatataaagatttaatattgaaaactatgtggctctggcacatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tcagagagtaaaatctaatataaagatttaatattgaaaactatgtggctctggcacatg 627

                                                                       
Query: 121 gcaagcttagaactcattatataataggaagaaacaatcactaggcgaagttaagaggat 180
           |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 626 gcaagcttagaactcattatataataggaagaaacaatcattaggggaagttaagaggat 567

                                                                       
Query: 181 tcaaaaaatcatgttgaggctattgagtaaatacaagagaaattaggttggatctttcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tcaaaaaatcatgttgaggctattgagtaaatacaagagaaattaggttggatctttcta 507

                                                                       
Query: 241 tatactattataaattcttatactggattataaaaatttatatatctgcactaaatttta 300
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tatactaaaataaattcttatactggattataaaaatttatatatctgcactaaatttta 447

                                                                       
Query: 301 acctgtatataaaatttgaattttaatattcagaaaaaaagacatttcaaattttgatta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 446 acctgtatataaaatttgaattttaatattcagaaaaaaagacatttcaaattttgattg 387

                                                                       
Query: 361 agtttaaggaaaattaaagctttggtttttctgaaaaaaattcactaatgctttcttata 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agtttaagaaaaattaaagctttggtttttctgaaaaaaattcactaatgctttcttata 327

                                                                       
Query: 421 gtttgttttttatcactattacttaagtattatctttcttaactgttattcatgaatgaa 480
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtttg-tttttatcactattacttaagtattatctttcttaactgttattcatgaatgaa 268

                                                                       
Query: 481 tgatttatttattccagcaaatattgtgtggtgttatacacagttctacatattttaata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgatttatttattccagcaaatattgtgtggtgttatacacagttctacatattttaata 208

                  
Query: 541 aagtata 547
           |||||||
Sbjct: 207 aagtata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 946
Length adjustment: 10
Effective length of query: 537
Effective length of database: 936
Effective search space:   502632
Effective search space used:   502632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)