Query= MSMg01no474_f10.b1 MSMg01no474_f10.b1 CHROMAT_FILE:
MSMg01no474_f10.b1 PHD_FILE: MSMg01no474_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:45 2005
(474 letters)
>mm_chr7_47351156_47352029
Length = 874
Score = 880 bits (455), Expect = 0.0
Identities = 467/471 (99%), Gaps = 2/471 (0%)
Strand = Plus / Plus
Query: 5 gaattctccag-tttccactgtcctctcctagctccttggttgctgagtgttttaaaggg 63
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccagcttt-cactgtcctctcctagctccttggttgctgagtgttttaaaggg 263
Query: 64 agccatagaataacagacattcattccctttagagactctaaacaagttctcatgctaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agccatagaataacagacattcattccctttagagactctaaacaagttctcatgctaaa 323
Query: 124 caggtttaatcctagggtgacatccctgactacttctcctagccatcctgttcacagtga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caggtttaatcctagggtgacatccctgactacttctcctagccatcctgttcacagtga 383
Query: 184 gcatctgtggcggcctcttggctagtgtgacttggtggcattatcacaggtgaacgggcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcatctgtggcggcctcttggctagtgtgacttggtggcattatcacaggtgaacgggcc 443
Query: 244 ttctgaatagccagcaatgacaatgtgattattgtagcaactcctttgatatcttgtctc 303
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 444 ttctgaatagccagcaatgacaatgtgaatagtgtagcaactcctttgatatcttgtctc 503
Query: 304 actccatgtaatcacgtgacttttctaatcttcgagaaaggaaggatctgaagtcaggtg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 actccatgtaatcacgtgacttttctaatcttcgagaaaggaaggatctgaagtcaggtg 563
Query: 364 tgcagatgcagagctctgtgcttcagtgggactttcttgattataacaggttgcctgatg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgcagatgcagagctctgtgcttcagtgggactttcttgattataacaggttgcctgatg 623
Query: 424 caattgaagaagctttacctacaggcaagcactgagtctcggtctgcagag 474
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caattgaagaagctttacctacaggcaagcactgagtctcggtctgcagag 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no474_f10.g1 MSMg01no474_f10.g1 CHROMAT_FILE:
MSMg01no474_f10.g1 PHD_FILE: MSMg01no474_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:45 2005
(216 letters)
>mm_chr7_47527407_47528022
Length = 616
Score = 402 bits (208), Expect = e-117
Identities = 214/216 (99%)
Strand = Plus / Minus
Query: 1 gcatgttctaggcacatagaaaccataacttcaagggcacagatgcaggagagcctatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gcatgttctaggcacatagaaaccataacttcaagggcacagatgcaggagagcctatca 357
Query: 61 gaggttcctattactcagaatgccatcctgtaatttggccaccagtgaattggtcgtcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gaggttcctattactcagaatgccatcctgtaatttggccaccagtgaattggtcgtcag 297
Query: 121 aaggacatttgacaattaactatcaggaggtatttattattagggcacagagagcaaggc 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 296 aaggacatttgacaattaactatcaggaggtatttattattagggcacagtgagcaaggc 237
Query: 181 agcataacctcacactagtcttcctccgatccagtt 216
||||||||||||||||||||||||||| ||||||||
Sbjct: 236 agcataacctcacactagtcttcctcctatccagtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space: 125649
Effective search space used: 125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
