BAC Information

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BAC

Clone NameMSMg01-474H13
Chromosome7 (Build37)
Map Location 114,794,368 - 114,794,887
singlet/doubletsinglet
Overlap genePpfibp2
Upstream geneOlfr693, Olfr694, Olfr695, Olfr696-ps1, Olfr697, Olfr698, Olfr699, Olfr700, Olfr701, Olfr702, Olfr703, Olfr704, Olfr705, Olfr706, Olfr707, Olfr708, Olfr709-ps1, Olfr710, LOC384651, Olfr6, Olfr711, GA_x5J8B7W6B6J-1784824-1783474, Olfr2, Olfr713, Olfr714, Olfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik, Syt9, Olfml1, 5330417H12Rik
Downstream geneCyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474H13.T7 (MSMg01no474_h13.b1)MSMg01-474H13.TJ (MSMg01no474_h13.g1)
ACCAG556526AG556527
length711777
length of high quality
(start - end)
524 (70 - 593)236 (75 - 310)
definitionCHROMAT_FILE: MSMg01no474_h13.b1 PHD_FILE: MSMg01no474_h13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:56 2005CHROMAT_FILE: MSMg01no474_h13.g1 PHD_FILE: MSMg01no474_h13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGATTTTCCCTAACTGATTCATAAGATGTCTCTTTAGGAAGC
ATCTACTTCTGTTATATTATAATTGTTATACGTGGTACCTTCAGTCTTGT
TTTTTTTTTAATATAGCAGAAGTTAATTTTATATAGTCAGTGTGCAGCGC
TTTGTTATATTTTGCTCAGTTACCATTGTGCTTACCAAATCTTAATCTAA
TCCAATTTTCATCTGTACCTTTATACTTACACTTTAATATTTATATATAA
TCCATGTCTCTAAAATTTTACTTATGTATGTGGTATAAAATATCCAAGAC
CACACCATCACATAAAGTTAGTAAAAACCTCTATATTTTCAGTCTCTCTC
AGCCCAACTCATTGTCTAGTCCCCTGTATAAAAGTCTTTGCAGTTAGAGT
GTGTGGCCTACAGGATGGCTTGGTAGGGAGAACACTTGCTGTGCACACTC
ATGTCCTGAGCTCAATCCCCAGGAGTGAGTGGAAGGAAGAACACCAGCAT
CCCCAGATTGCCCTGATGCTGCACTTGTCCCATGGCATGCGTGTTGTCCA
CACTGACCTGTGTGCGCACACACACTTTAATAACAGAAGGTTTGTGTATT
GCAGGGTAATGATTGCTGAGCAATTGCGTGGAGATTGTAGGGCTTGCTGA
TTTTCTAACCT
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTACCGACGAAATCAAAAAAGAGTCACTTATCTCCTAAGCT
GTATAACCGTGGGCTAGCTACTTATTTATATGAGGCCTCAGGTTACTTAT
TTTTAATGAAAACTAAGTTCTCTTCACTGGGTTGTTATAAGGAATGAATG
AGCTAATGAAAGTTAGCCTCCTTAGGATGAGATATGACACATTGTAAGTA
CACATTATTGTTTTCTAAATCAACTAGGAAGGTTAAGGAGGATTGAATGG
CCTTTGCAGAAGTTCTAATTAGTAATTACTACTATCTCTCTCAGATAGAT
AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG
ATGATACTCTCCCCCCCCTTTTTTTTTTCTATTTTTTTCCTTTTTCCCTT
TCTTTCTTTTCCTTCCTTCTTTTCTATTTTTTTTTCATCCTCCTATCCTC
TCTTTTCTTATTCGTTCCTATATTCTCTTCTTTGTTTCATACCACTTTTT
TCCCTTATCCCATACATCCTTCTTGCTTCTATTACTCTTCTTATCTCCTA
CCTTCTCCATTTATCCTTTTCCTTTTTGCCCGACTTCTCTTTCTCTTCTA
CTTCATCCTCTTCATCCTTGCGAGCTCTCTTTTTTTTTATTTTTCTCGTT
CCCTCCCTCCTTCGTCCGCTTCCCCTCATTTCCTCCCCCTCCTCTCTCTC
TCTCTCTCACTTCGTCCCCCATTCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_h13.b1 MSMg01no474_h13.b1 CHROMAT_FILE:
MSMg01no474_h13.b1 PHD_FILE: MSMg01no474_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:56 2005
         (524 letters)



>mm_chr7_114794168_114795087
          Length = 920

 Score =  938 bits (485), Expect = 0.0
 Identities = 513/525 (97%), Gaps = 6/525 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactgattcataagatgtctctttaggaagcatctacttctgttatattataattgttat 60
           ||||||||||||||||||||||||||||||||||||||||||     |||||||||||||
Sbjct: 201 aactgattcataagatgtctctttaggaagcatctacttctg-----ttataattgttat 255

                                                                       
Query: 61  acgtggtaccttcagtcttg-ttttttttttaatatagcagaagttaattttatatagtc 119
            |||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 256 gcgtggtgccttcagtcttgtttttttttttaatgtagcagaagttaattttatatagtc 315

                                                                       
Query: 120 agtgtgcagcgctttgttatattttgctcagttaccattgtgcttaccaaatcttaatct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agtgtgcagcgctttgttatattttgctcagttaccattgtgcttaccaaatcttaatct 375

                                                                       
Query: 180 aatccaattttcatctgtacctttatacttacactttaatatttatatataatccatgtc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aatccaattttcatctgtacctttatacttacactttaatatttatatataatccatgtc 435

                                                                       
Query: 240 tctaaaattttacttatgtatgtggtataaaatatccaagaccacaccatcacataaagt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tctaaaattttacttatgtatgtggtataaaatatccaagaccacaccatcacataaagt 495

                                                                       
Query: 300 tagtaaaaacctctatattttcagtctctctcagcccaactcattgtctagtcccctgta 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 496 tagtaaaaacctctatattttcagtctctctcagcccaactcattgtctagttccctgta 555

                                                                       
Query: 360 taaaagtctttgcagttagagtgtgtggcctacaggatggcttggtagggagaacacttg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 taaaagtctttgcagttagagtgtgtggcctacaggatggcttggtagggagaacacttg 615

                                                                       
Query: 420 ctgtgcacactcatgtcctgagctcaatccccaggagtgagtggaaggaagaacaccagc 479
           |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 616 ctgtgcacactcatgtcctgagctcaatccccgggactgagtggaaggaagaacaccagc 675

                                                        
Query: 480 atccccagattgccctgatgctgcacttgtcccatggcatgcgtg 524
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 atccccagattgccctgatgctgcacttgtcccatggcatgcgtg 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 920
Length adjustment: 10
Effective length of query: 514
Effective length of database: 910
Effective search space:   467740
Effective search space used:   467740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)