BAC Information

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BAC

Clone NameMSMg01-474L08
Chromosome7 (Build37)
Map Location 94,374,250 - 94,374,730
singlet/doubletsinglet
Overlap genenone
Upstream geneVmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896, EG621430
Downstream geneLOC621477, Nox4, Tyr, Grm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474L08.T7 (MSMg01no474_l08.b1)MSMg01-474L08.TJ (MSMg01no474_l08.g1)
ACCAG556706AG556707
length757742
length of high quality
(start - end)
413 (74 - 486)479 (77 - 555)
definitionCHROMAT_FILE: MSMg01no474_l08.b1 PHD_FILE: MSMg01no474_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:15 2005CHROMAT_FILE: MSMg01no474_l08.g1 PHD_FILE: MSMg01no474_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTGGTCTTTGCGGGGATACGAACTCCATAGGAAGACCATCAGT
CAACTCACCTGGACCTTTGGGGCTCTCAGAGTCTGAACACCCAACCAAAG
AACCTACAAGGGGTAGACCTAGGTTTCTCAATACTTATGTAGAAGATTGC
AACCTGGTCTTCATGTGGGTTCCAAAAATTTGGAGTGAGGGCTATCCCAA
AAGCTGTTGCCTGTATATATAAGGGATATGTCCTTCAACCTGGGCTGCCT
TGTCTACCCTCCGTGGGAGATATAACATCTAGCCTTGCACAGACTTGAAA
TGCTAGGATGGAGATACTCAGGTAGACCTCCACCTGCTCCGAGAAAAAGT
CGAGGGGGAAGTATAAAGATTGTGAGAGGGTGTGACTGGGAGGGGGGCAA
TGAGCAGGATATAAAGAGAATAAATAAAAATTAAAATAACAAATAACAAA
TATTTTAATATAATGAACATTATTTACCATCAGTGTAACAATTATATCTA
CCTATCAACTGATGTACATGTCCCCTTTTTTTCTCTAATGAGTCTTTGAC
AAGGGTTTTTAATTTAACTGGATCTATTTTTTTTTTCCACTCAAATGCTT
CTAGGTATTCTTTTTATTTGTTTTCAATTCTACCGATACCCGTGCTGTTC
AAAAATCTTTTCCATTCCCTATTTCCCCCCTTTTGGATTTTTTTGTCTTT
TCCCTCA
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCACGGGCATGGAAACATGCA
TGGCTGCACATAACCTTTCAAAGACTATCAGAAGTACTCTCAAAGACTTC
AACTAAGTAACTTATTACCAAGCACTAATTAAGAAAATGCCTTACAGTCA
CATTTTATGGAGGCACTTTTCTCAGTTGAGCTTTCCTCCTTTCAGATAAC
TCTGGTCTATATCACGTTGACATAAGACTTTCCACCACAATAGTCAAACC
TATAGAAACAGAGAATAAAATGCTAATTGCCAGGAATGTAATTTTGAGGT
GAATAAATTATAATTTATTGATAAATTGGTAGAAAATTTGTTCTATTAAA
TGAGTAAGTCATAGAGATGTATTAATACAATAATAAAATATGATAGCATG
ATCTTAGCATGCGTTATGAATGCTTTTTTAAAAACAAAAAAAGGACAGAA
AAAAGTGGATATGATGAATAGCTATTATTTAATTGTTATTTTATGAGTTT
CACATGTGTTCAAACTCATCAAATTGTAAATATCAGACAGATGTAGTTTT
GTGTATCAGTAACAAACCAGTAAATTTATTAAATGATTTAACTGTTGACC
TATTCCAGGGGACTGATAAAATGTAAAACCCTTTACTGATATGAGGACCC
CTAATTTTTAATTGCCCCGGTAAACTCCTGGAGGGCTTCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_l08.g1 MSMg01no474_l08.g1 CHROMAT_FILE:
MSMg01no474_l08.g1 PHD_FILE: MSMg01no474_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:15 2005
         (479 letters)



>mm_chr7_94374052_94374930
          Length = 879

 Score =  870 bits (450), Expect = 0.0
 Identities = 473/484 (97%), Gaps = 8/484 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcccacgggcatggaaacatgcatggctgcacataacctttcaaagactatcagaagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ttcccacgggcatggaaacatgcatggctgcacataacctttcaaagactatcagaagta 258

                                                                       
Query: 61  ctctcaaagacttcaactaagtaacttattaccaagcactaattaagaaaatgccttaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctctcaaagacttcaactaagtaacttattaccaagcactaattaagaaaatgccttaca 318

                                                                       
Query: 121 gtcacattttatggaggcacttttctcagttgagctttcctcctttcagataactctggt 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtcacattttatggaggtacttttctcagttgagctttcctcctttcagataactctggt 378

                                                                       
Query: 181 ctatatcacgttgacataagactttccaccacaatagtcaaacctatagaaacagagaat 240
           |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 379 ctatatcatgttgacataagacttcccaccacaatagtcaaacctatagaaacagagaat 438

                                                                       
Query: 241 aaaatgctaattgccaggaatgtaa-ttttgaggtgaataaattataatttattgataaa 299
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 439 aaaatgctaattgccaggaatgtaaattttgaggtgaataaattataatttattgataaa 498

                                                                       
Query: 300 ttggtagaaaatttgttctattaaatgagtaagtcatagagatgtattaa----tacaat 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||
Sbjct: 499 ttggtagaaaatttgttctattaaatgagtaagtcatagagatgtattaaacaatacaat 558

                                                                       
Query: 356 aataaaatatgatagcatgatcttagcatgcgttatgaatgcttttttaaaaacaaaaaa 415
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aataaaatat---agcatgatcttagcatgcgttatgaatgcttttttaaaaacaaaaaa 615

                                                                       
Query: 416 aggacagaaaaaagtggatatgatgaatagctattatttaattgttattttatgagtttc 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 aggacagaaaaaagtggatatgatgaatagctattatttaattgttattttatgagtttc 675

               
Query: 476 acat 479
           ||||
Sbjct: 676 acat 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)