BAC Information

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BAC

Clone NameMSMg01-475E03
Chromosome7 (Build37)
Map Location 119,422,636 - 119,423,105
singlet/doubletsinglet
Overlap geneMical2
Upstream geneLOC384658, Galntl4, LOC668399, LOC100042678, Usp47, Dkk3
Downstream geneMicalcl, Parva, LOC627808, Tead1, 4632411J06Rik, LOC434227, Arntl, A630005I04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475E03.T7 (MSMg01no475_e03.b1)MSMg01-475E03.TJ (MSMg01no475_e03.g1)
ACCAG557126AG557127
length1,290745
length of high quality
(start - end)
---470 (84 - 553)
definitionCHROMAT_FILE: MSMg01no475_e03.b1 PHD_FILE: MSMg01no475_e03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:58 2005CHROMAT_FILE: MSMg01no475_e03.g1 PHD_FILE: MSMg01no475_e03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCAGCACGAACATATCATTCTGCCTATTTTTATTTACTTTTCTCCTCTA
TCGCCTTCTTACTTACGTGAGGCGCTAGTTCGCGGTCGCGCCCATTATAT
TCCGATCTACAGTGTGCCGTTTCTCTCCGCCCCCCGCGTTCTTAGGGCTA
CGTTGACGATGAGTTGTGCTATCACTTGCGCTCTCGGTCACGTCGTTAGC
ATATGGTCTCGACTGCCGCGCGGATACCGCGGGTTATCGCGATCCCCGTT
TCTCGCCTCGTCCTTTCATCTTAACTTATCTTGTTTCTCCTTCCTCTCCC
CCGCAGTTACGTTGCTTAAGTGTGATTATTACCCCCACCGCGCTCCACTT
ACCCCTCAATTTTCCGGCACTGTCGCGTCCTCGTTCTCGCTTCTCTGTTC
ACCCCGCCCGCTCCCTCTATAGCTGTCCGCGTTGTGCGGAAGCGTGGGAT
CGACTCGTATGGCGTCGCTCATGCGCGCTCTTTTCTTTGCTCATTTACAC
CGCCACGTCCTATCTCTCTCTTCCAATGACTCTGCTGCGTGGGTCGCCAT
CGCACCCGACCGGTACCGCGACTGTGGAGGTTAGTGTGCCGCGCGCGTTA
GCCTGCGTTGCACAGGTATCTATCGTGACGGCTCCGAATGATTCCCCGGC
TACAGCCGTATGCGCGGCGCTTAATAAGATGACATAGTAGCGGTGCATGC
TCTCGGCATTAATCATGCCGAGTGCCGCAAATAAGCCCCCCGTTGGGCGC
TTTGTTGTAAGCCTCGCCGTCGCGATTGCTCGTTGACATGTCGTTGTACG
CCTGTTGCGGCTTACGACTACACCGAACGGTCGTAAGTGTTGCCGCGCCG
CGTCTGATAGTGCCCGTGCAAAGTGGCGCAGCAGTAATATCGTCTGTGAT
GTTGGTCGCCCCGCGTCTTGTCTTCTGTATCTCCGCCGCACAACTATTAT
ATCCGTCCGCCTGTACACCCCGCTCTGTGTGTTCGCGAAGTGAGTGCCTC
CATCACTGCTTATAGTGTATTGATTCGCGTTATCGCGCGCGGAGCGCCGC
CGCGCGGNTGCGAATATATGCGGCGAATCTGTTACCGCGCGGTCGCGCGG
TACTATTATTCGGCATATCGCGCTGCGCGCGCGGCGCGCTGTGTGTGCGG
TCGCCAGTTGATATGATATTATCTCAGCCTCCTTTGAGACACGCCGCGCC
TATCTATCCGTGCGCACTCGCATCCTTATTCACGTTCCGCCGCCTATGGT
GTGACACACATCGTACAGATCTGTTCGCTCTATACGCACN
NNNNNNNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGGGCAAGCTACAC
GGAAGTCCATCAGGCTCAGCCTTTAAGTTGTTCTCCGTTGCTGAGTCAGC
GAGGATTGTGTTCAGCTCTGAGTTACTGTACGCAGCCACAAACAGCCATG
GGGACCAAAAGAAAAGGCTCATGTTTTTAAAGCAGGAATTCAGGGCAGAG
GTGGCCACTAAAGGATCAGTAGACAGCCTCTAGGCCAGTGCTGCCTGCAA
GAGCTATGATGTGAGCCAAACGAGCATTGCAAGGAAATGGTGGGATGACG
GAGACACTTTATTTTATGTGGAGGAATCCCGTGGAACTGGAGTTACAGGT
GTTTGTGATCTGCCATGTGGATGCTGGAAACTGAACTTGAGTCCTCTGGG
AAAACAGCAAATGTTCTTAACCTCTAAGTAATCTCTAAGCTGTTGAAATA
ACTTTAAATGTCACACACACGCACACACATACACACACACACACACACAC
ACACACTTTCCACTTATACTTACACTCTCTCACTCTGTGGTGGTGGGAAC
CTATTTCTTCTTGGTCCATTCCCTGTCAATCTGTAGAGGTACATACTTAT
CTCACCTGACCCTTTCCTTTAGGAGTACCGCGTTATTCTACCCCACGCAT
ATATCTCTTCTGTGACTTCCTTTTCCTCCTTTCTGTGTTCGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_e03.g1 MSMg01no475_e03.g1 CHROMAT_FILE:
MSMg01no475_e03.g1 PHD_FILE: MSMg01no475_e03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:59 2005
         (470 letters)



>mm_chr7_119422436_119423305
          Length = 870

 Score =  862 bits (446), Expect = 0.0
 Identities = 464/470 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtggggcaagctacacggaagtccatcaggctcagcctttaagttgttctccgttgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtggggcaagctacacggaagtccatcaggctcagcctttaagttgttctccgttgctg 260

                                                                       
Query: 61  agtcagcgaggattgtgttcagctctgagttactgtacgcagccacaaacagccatgggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtcagcgaggattgtgttcagctctgagttactgtacgcagccacaaacagccatgggg 320

                                                                       
Query: 121 accaaaagaaaaggctcatgtttttaaagcaggaattcagggcagaggtggccactaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accaaaagaaaaggctcatgtttttaaagcaggaattcagggcagaggtggccactaaag 380

                                                                       
Query: 181 gatcagtagacagcctctaggccagtgctgcctgcaagagctatgatgtgagccaaacga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatcagtagacagcctctaggccagtgctgcctgcaagagctatgatgtgagccaaacga 440

                                                                       
Query: 241 gcattgcaaggaaatggtgggatgacggagacactttattttatgtggaggaatcccgtg 300
           ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 441 gcagtgcaaggaaatggtgggatgacggagacactttattttatgtggaggagtcccatg 500

                                                                       
Query: 301 gaactggagttacaggtgtttgtgatctgccatgtggatgctggaaactgaacttgagtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaactggagttacaggtgtttgtgatctgccatgtggatgctggaaactgaacttgagtc 560

                                                                       
Query: 361 ctctgggaaaacagcaaatgttcttaacctctaagtaatctctaagctgttgaaataact 420
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 561 ctctgggaaaacagcaaatgttcttaacctctaagtaatctctaggttgttgaaataact 620

                                                             
Query: 421 ttaaatgtcacacacacgcacacacatacacacacacacacacacacaca 470
           |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 ttaaatgtcacacacacgcacacacacacacacacacacacacacacaca 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)