BAC Information

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BAC

Clone NameMSMg01-475H12
Chromosome7 (Build37)
Map Location 97,969,953 - 97,970,199
singlet/doubletsinglet
Overlap genenone
Upstream geneMe3, Ccdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik, LOC666689, LOC621816, LOC100039943
Downstream geneDlg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475H12.T7 (MSMg01no475_h12.b1)MSMg01-475H12.TJ (MSMg01no475_h12.g1)
ACCAG557288AG557289
length733776
length of high quality
(start - end)
247 (47 - 293)240 (80 - 319)
definitionCHROMAT_FILE: MSMg01no475_h12.b1 PHD_FILE: MSMg01no475_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:15 2005CHROMAT_FILE: MSMg01no475_h12.g1 PHD_FILE: MSMg01no475_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACACCTAAAGCGAGACACACCGCGGAATTCTTTGTATTACACTCATAATA
TGAGTCTGATGAAAGATGTATCTATTTTTAGAAGCTGCTTGGCCTTGTTT
GATGCTGTAAGTTCAAACCACCGACCAGCTCAGTCTTTTATAGTAACTTA
TATGTGCTTAATCATTTCTTTACTGATGGTTACTGACCAAAAAGAAATTT
AAGACATAAATGTTTACCAAATCCAATGAAAAATATATTCTTCTTCAGTA
CTTTCATTTCTTTTGTGGAACCACTATAACGGAAGAAAATATTCNGTGNG
TTGAGGCTCAGAATGTGCCATCCTAAAATATGTCTTGTTGACATAAGGAT
TATTTTGAGCTAAAGGCAATTGAGAAAAAGAAGATGAAAGGCAAGTGTTC
TGCCCTCATCCTATCGACAGGGAAAAAATCAGGATGATTGAAGTCAATTC
TAGACTCTTAGCCCAGAGATACATCAGAAGAATGTATGTGACAAACCTTC
CGTAATCCATTCCTTTCTGCTGCTATTAGATTTCTCACGGCTTTCCCATC
CCAGAGTTACATATCCTCAAAGAGCACAGGCCTCTTAGTTTGGCCATCTC
AATTCTAAACAGCTTTGTTTTCCTTGGCTAATAGTGTTTATGGTACGGGT
TGGATATGTGGGATCACCCAGAAAAACTGTGGTCCCCAAGACCGCCCCCC
AATAAATGGCATTTTTTGACGAGCCCCTGCCAG
TTTTCGGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTTAATTAGTTTATAAATG
TGAATATTAAGTTATCCCTTATACAAATTATTGAAAAGACTATTCTTTCC
ACCATGGAATTATCTTGGTCCTACTGTTGAAAACTGGCCATTGATGAATG
TGTTTATTCTTAAAATCACAATTACACTCCATTCATCTGTATGGCTATTA
CTGTGCCAGTACCACACTCAGTTTTAAAATCAGGAAGCATGAATCTTCTG
CTGATCCCTTGTATTTTTTATTGTTTTTTGGCATTAATTTGTTGATTTGG
GGGAAGGTACACTTGTCACCCCAATTTTTACCCCGCCCCCGCCCAATCGC
CTAATATATTTGGCCAGCTCCTTCATCCATCTTTTGTGTTCCCCTCCCTT
CCCCCTCTTTCTTCTTCCCTCTTTCCTTCCCCCCTCTCCCTTTTTTTTCC
CCTTTTTTCCTTCCCTCTCCTTTCCCCTTCTTCTCCCTTCTCCTCTCTTC
TCCCCCCTCTCCTTTTCTCTTCTTCCTCCCTCCCTTTTTCCTTCCCTTCC
TTTCCCTCCTTTCCTTTCCCTCCCCCTCCCTTTTTTCTTTTTTCCTCTCT
TTCCCCCCCCCTTTTTCTACCCCTTTTCCTCCTTTTTCATCTCTTACTTC
CCCTCCCCTCTTCTTTCTTTCTCCCTCTCCCCCCTTTATTTTTCACTTCC
CTCCCCCTTTCCCTCCACTTCCTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_h12.b1 MSMg01no475_h12.b1 CHROMAT_FILE:
MSMg01no475_h12.b1 PHD_FILE: MSMg01no475_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:15 2005
         (247 letters)



>mm_chr7_97969753_97970399
          Length = 647

 Score =  470 bits (243), Expect = e-137
 Identities = 246/247 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatatgagtctgatgaaagatgtatctatttttagaagctgcttggccttgtttgatgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aatatgagtctgatgaaagatgtatctatttttagaagctgcttggccttgtttgatgct 388

                                                                       
Query: 61  gtaagttcaaaccaccgaccagctcagtcttttatagtaacttatatgtgcttaatcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gtaagttcaaaccaccgaccagctcagtcttttatagtaacttatatgtgcttaatcatt 328

                                                                       
Query: 121 tctttactgatggttactgaccaaaaagaaatttaagacataaatgtttaccaaatccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tctttactgatggttactgaccaaaaagaaatttaagacataaatgtttaccaaatccaa 268

                                                                       
Query: 181 tgaaaaatatattcttcttcagtactttcatttcttttgtggaaccactataacggaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 267 tgaaaaatatattcttcttcagtactttcatttcttttgtggaaccactgtaacggaaga 208

                  
Query: 241 aaatatt 247
           |||||||
Sbjct: 207 aaatatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)