BAC Information

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BAC

Clone NameMSMg01-475L23
Chromosome7 (Build37)
Map Location 51,995,524 - 51,995,923
singlet/doubletsinglet
Overlap geneZfp473
Upstream geneKlk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik
Downstream geneVrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475L23.T7 (MSMg01no475_l23.b1)MSMg01-475L23.TJ (MSMg01no475_l23.g1)
ACCAG557501AG557502
length762724
length of high quality
(start - end)		404 (79 - 482)401 (91 - 491)
definitionCHROMAT_FILE: MSMg01no475_l23.b1 PHD_FILE: MSMg01no475_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:37 2005CHROMAT_FILE: MSMg01no475_l23.g1 PHD_FILE: MSMg01no475_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGA
ATCCGCGGAATTCACATTGCATCACTAAGCTTTTGGTCCTCCCTCCCCTC
CACAAGGCCCATGTAAAGAATTGTCAGTGCAGGGCTGGAGAGACATGGCC
CAGTGGTTAAGAGCACTGGCTCCTCTCCCAGAGAGCTCAGCTTTGATTCC
CAGCACTCACAAGGCACCTCACAGCGGTCTGAAACTTCAGTTTTAAGGGG
TTGATCTGACACCCTCTTCTAGCCTCTGCAGGCTCCATACATGAACATAG
TGCACGGATATACATGCAGACAAAACAGCCACTTTTCGTAAAATATTTTT
TAAACCTCAAAAAAATTAACATAGTTAATGTAATTGTTAACATATATGTA
CATAAATACATATATAATGTATATGTATAATTTAAATATTTTATGTATTT
ATTTTTGATATTTTATACATACCTTTTTTGGTTGGNTTGTTTGTTTGCTT
GCTTGTTTGAGACAGGNTTTCTCTGTGTAGCCTTANTGGGTCTTGAATTG
CTCCGTAAACACATCTGGGCTCTGCCTCCTTGGGATAACGTTTGCTGCCC
CCTCCCTGCCCTTGTCCACCAATATTTCTCAACCACACCTTCCCAATTAA
CTTACTTCTCCCCCTTTTTTTCCCTTTACCGCGCCCTCCCCATTTATACT
ATTTACTCCTTCCTTCCTTTTCCCATTTTTATTCCATATTATTTCAGCCC
TCTCCCCCCCCT

CTCTTTTTTNNCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATATGGAA
CAGGCATTCAGAGGTGCTTTTTAAAAATGTAATTATAAATGATCGCATAG
CTGGGCAAGGGATATAGAGCAGACCCAGTCACAGGAACTCAGACATAGAT
GTGTAGACAGATCCAGCCCCACACTCTTGGTTTATGATAGTCTGGTTGCC
TCATTCCTCACATCCATCCACTGGTGTGCTGTCTGAGGAGGAGTCATATT
AACGTGGAAGTACTCACAAGTGAGGTGCTGCTGCCTGACTGCTGAGTCCA
TATTCTTGTGTTTCTACTTGTTTCCATGATTGAAAACGTCTATAAAGAGC
ACAAAGCCAAGTGTGGTGGTGTGTACCTGTAATCCCAGCACCCAGGAGAT
CCAGCCTGATTTACAGAGCAGGACCCTGTTTTTAAACAAGAACAACAAAA
ACTTCCAAAATCTTATATTTTGGTCAGGCATGATGACGCGCACCTTTATT
CCCAGCACTCACAAGGTGGAAGGCCGTAGATCCCCGTGAGTTTCGGGACC
ACCACGGATTGCCTGGAAATCCCGGCCCTTGTCAACTCAGGACGCTTTCA
TACCCCCTTTTTCTTTTCTCTTCCTCCCCTTTTTTCCCGTGTCGCTTCCC
TTCCCCTTCCGCTTCCTGTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_l23.g1 MSMg01no475_l23.g1 CHROMAT_FILE:
MSMg01no475_l23.g1 PHD_FILE: MSMg01no475_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:37 2005
         (401 letters)



>mm_chr7_51995411_51996210
          Length = 800

 Score =  627 bits (324), Expect = 0.0
 Identities = 382/402 (95%), Gaps = 3/402 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatatggaacaggcattcagaggtgctttttaaaaatgtaattataaatgatcgcatag 60
           |||||||||||| |||||||||||||||||||  |||||| ||||||||||||| || ||
Sbjct: 513 acatatggaacaagcattcagaggtgctttttttaaatgttattataaatgatcacacag 454

                                                                       
Query: 61  ctgggcaagggatatagagcagacccagtcacaggaactcagacatag-atgtgtagaca 119
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 453 atgggcaagggatatagagcagacccagtcacaggaactcagacatagcatgtgtagaca 394

                                                                       
Query: 120 gatccagccccacactcttggtttatgatagtctggttgcctcattcctcacatccatcc 179
           |||||||   ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 393 gatccag--acacactcttgggttatgataatctggttgcctcattcctcacatccatcc 336

                                                                       
Query: 180 actggtgtgctgtctgaggaggagtcatattaacgtggaagtactcacaagtgaggtgct 239
           ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 335 actggtgtgctgtctgaggaggagttatgttaacgtggaagtactcacaagtgaggtgct 276

                                                                       
Query: 240 gctgcctgactgctgagtccatattcttgtgtttctacttgtttccatgattgaaaacgt 299
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 275 gctgcctgactgctgggtccatattcttgtgtttctacttgtttccatgattgaaaatgt 216

                                                                       
Query: 300 ctataaagagcacaaagccaagtgtggtggtgtgtacctgtaatcccagcacccaggaga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ctataaagagcacaaagccaagtgtggtggtgtgtacctgtaatcccagcacccaggaga 156

                                                     
Query: 360 tccagcctgatttacagagcaggaccctgtttttaaacaaga 401
           |||||||||| ||||||||||||||||||| | |||||||||
Sbjct: 155 tccagcctgagttacagagcaggaccctgtctctaaacaaga 114


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 800
Length adjustment: 9
Effective length of query: 392
Effective length of database: 791
Effective search space:   310072
Effective search space used:   310072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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