Query= MSMg01no475_o04.b1 MSMg01no475_o04.b1 CHROMAT_FILE:
MSMg01no475_o04.b1 PHD_FILE: MSMg01no475_o04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:48 2005
(246 letters)
>mm_chr7_36802289_36802934
Length = 646
Score = 449 bits (232), Expect = e-131
Identities = 241/244 (98%)
Strand = Plus / Plus
Query: 1 tgcttatttatagggcaaatggatacatccagccccggccgtctgagcccaactttctca 60
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 201 tgcttatttatagggcaaatggatacatccagccccggccgtcagagcctaactttctca 260
Query: 61 tttacactgtacagcccatctctgtacccagagtggttctgggagctgtgagcaacggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttacactgtacagcccatctctgtacccagagtggttctgggagctgtgagcaacggca 320
Query: 121 gcagaggcagaaaccagagcagtgctggcgatatgtgcataccgctcttcatctgaggtt 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagaggcagaaaccagaacagtgctggcgatatgtgcataccgctcttcatctgaggtt 380
Query: 181 ctagaatcttccaagctaattgctgtaagggtttttgttcttgtgcactgaaaacccacg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagaatcttccaagctaattgctgtaagggtttttgttcttgtgcactgaaaacccacg 440
Query: 241 gctg 244
||||
Sbjct: 441 gctg 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no475_o04.g1 MSMg01no475_o04.g1 CHROMAT_FILE:
MSMg01no475_o04.g1 PHD_FILE: MSMg01no475_o04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:48 2005
(333 letters)
>mm_chr7_36962198_36962927
Length = 730
Score = 530 bits (274), Expect = e-155
Identities = 329/376 (87%), Gaps = 46/376 (12%)
Strand = Plus / Minus
Query: 1 acagattcagttttaaagccagtaagaggaaccttagggaaggataggtgatctatatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acagattcagttttaaagccagtaagaggaaccttagggaaggataggtgatctatatct 385
Query: 61 tgattggtgggttctatctctgggggtactgggtgatgctatgattggttagagtcttgc 120
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 384 tgattggtgggttctatctctgggggtactgggtgatgctatgattggtt--agtcttgc 327
Query: 121 ttcgagcatctttgactattttttgctttattcaagggaggttagctcttggcctaactc 180
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttcaagcatctttgacta-tttttgctttattcaagggaggttagctcttggcctaactc 268
Query: 181 ttgactatgagcttggctaactgtccaagctggggaggggtaaataagcctgcagttgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttgactatgagcttggctaactgtccaagctggggaggggtaaataagcctgcagttgtt 208
Query: 241 ccagtaactgacttgccca----------------------------------------- 259
|||||||||||||||||||
Sbjct: 207 ccagtaactgacttgcccagttccaggaagtagaaactcatgcctggtctcctgaactac 148
Query: 260 --gtttgcagcctgtcatggagtcagcctggctcaggccaattcactcctttcagtcatg 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 tggtttgcagcctgtcatggagtcagcctggctcaggccaattcactcctttcagtcatg 88
Query: 318 acccctctgagttggt 333
||||||||||||||||
Sbjct: 87 acccctctgagttggt 72
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 730
Length adjustment: 9
Effective length of query: 324
Effective length of database: 721
Effective search space: 233604
Effective search space used: 233604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
