BAC Information

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BAC

Clone NameMSMg01-475P17
Chromosome7 (Build37)
Map Location 142,885,228 - 142,885,674
singlet/doubletsinglet
Overlap geneMki67
Upstream geneDock1, B830028B13Rik, EG668693, LOC100043254, Foxi2, Clrn3, Ptpre
Downstream geneLOC668764, LOC546009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475P17.T7 (MSMg01no475_p17.b1)MSMg01-475P17.TJ (MSMg01no475_p17.g1)
ACCAG557681AG557682
length1,041749
length of high quality
(start - end)
---447 (74 - 520)
definitionCHROMAT_FILE: MSMg01no475_p17.b1 PHD_FILE: MSMg01no475_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:56 2005CHROMAT_FILE: MSMg01no475_p17.g1 PHD_FILE: MSMg01no475_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACATAATCCGCCCGACCGCCTACTACGACCTCAATTATCAGGTTACTAG
AGATACTGCGGGCAATTACCCTTGCGACCTTTTTTCCCATACACACATGA
GTATAACTGAGCGTGTATAAACGAGCTTGACTAGACTGTGACGGCTTTAC
TCCTAGTCTTTCTCCCCATATCGTCTCGGATAACTATGGCTGTCGTACTA
CCGACTAAGGTACAGACTTCATTGACATCCTCACCACATGAGCTGACTAT
ATCGACCGTTCTCCCTGACGTCATCCGTACGATGGGCCGTTTTTAACCTA
TGACCCCACCTTCTCGTGTGTGTATCACTGTTAGTGCCTTCTTTTCTGTG
CTTGATCATTCTCATGCTAGCTTCCACGCCATCCTCATCTGCCTGAACCT
TGACCCTGCTGAATCCTTATACCACATTTGCATACCTTTCTTTCTTCCTG
CCNGTTCCTCCGCCCTCCTCCTATTCCTTGCCCATTTTACTTCTCTCCTC
CCCTGCTTATATAACCAACTTCTTATATAGACTCCTGTGTCCAGTCGTAC
CTCTATGCTTCCTCCCCGACTGCCACCATCATATAATCATTTGTTCTCTC
ATACCGTCAGTATTCACACCACGTACTACCACTCTTCGCCCCCTTGTCTC
CACTCATTCCATTTGTTCCTCTCTCTTCTCCTTCCGTCTTCCCTCTTTTC
TTTTTTCTCCCTACTTCCATCTTTCTTCTCTTACCCCCATTTCTCTCTCC
TCCCTCTTTTTCCCCCCTTTCCTCCCCCCCCCCTCTCTTATCATTTCTCC
TCTTTCCCTTTCCCATTTTCTCGCTCGTCCCTCTCTCTCCTTTTTTCCCC
CTCCTCCTTTATTCTTCCCCCATCTCTTCTTTCTCCCTCCATCGTTTCGC
CTTCCTCCCCCCCTTTTTTCATACCCACTATACCTTCTCGTTCTCTCCCG
TAATATGCCTCCCCTCTAATTAGCANTCCTTCTTCTATTCGCCACTTTTT
ATCTCCGCTCCTCTTTCTCAACTCCTTTACATTTACGTCCN
CCCCGATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCGCGCAATTCCATGTATAACTAATTTGAAGAGTT
AATCAGGGAACAGGTGGCCAGTGTTGTTCTGTGTATGTGACAGTGTCTAT
TAAGGATGCAGGTGCTGCTAAGGTTTATCTATCCTTGAGACGGAATGAAA
CAGGGAGGTCACCATGGCACCCTTCAAAGATTGCCGGGCCTTGTACCTTA
TTGATCTTTAAAGGATCAGCAGTTCATTTACTGCCTTTGTGATGGGCATT
CTTCAGTAGTATGAACTTTTATGTTTTTGATATGCATTATGATTGACATC
CTGGAATTATAATTTGTTAGTATGTATTCTTTTTCCATAGGAACAAAGTA
GCCAAGGCATTGCCTTGAATATCATAGATAACTCTTAGCAAATTAATCAA
TATAAAATTTGTTATTTTCTCTTTTTATATTTTTGCTTCTTTTTTTTTTT
TCCTGATGGATCTTTTAGATTTCACTAATTTTGTGGTTGCCTTCTCATTC
CCTTACAAACACCCCATAATCCGAGTTTTCTACCCATAACCCATGTTCAA
CAGCCCCCCGCCTTATTTTGATCCTTTCTGTCTCACATGTTTTTATTTTC
AAAATCCGATTTTATTCCATTTACTGCCCTTCCCCTATCACTATCTTTCT
TTCCCCCTTTGCTCGTCCCCTTTCTCTTTTCCCCCTCCCCCTTTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_p17.g1 MSMg01no475_p17.g1 CHROMAT_FILE:
MSMg01no475_p17.g1 PHD_FILE: MSMg01no475_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:56 2005
         (447 letters)



>mm_chr7_142885091_142885937
          Length = 847

 Score =  826 bits (427), Expect = 0.0
 Identities = 442/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccatgtataactaatttgaagagttaatcagggaacaggtggccagtgttgttctgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ttccatgtataactaatttgaagagttaatcagggaacaggtggccagtgttgttctgtg 525

                                                                       
Query: 61  tatgtgacagtgtctattaaggatgcaggtgctgctaaggtttatctatccttgagacgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 524 tatgtgacagtgtctattaaggatgcaggtgctgctaaggtttatctatccttgagatgg 465

                                                                       
Query: 121 aatgaaacagggaggtcaccatggcacccttcaaagattgccgggccttgtaccttattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 464 aatgaaacagggaggtcaccatggcacccttcaaagattgccgggccttgtaccttaatg 405

                                                                       
Query: 181 atctttaaaggatcagcagttcatttactgcctttgtgatgggcattcttcagtagtatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 atctttaaaggatcagcagttcatttactgcctttgtgatgggcattcttcagtagtatg 345

                                                                       
Query: 241 aacttttatgtttttgatatgcattatgattgacatcctggaattataatttgttagtat 300
           ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aactggaatgtttttgatatgcattatgattgacatcctggaattataatttgttagtat 285

                                                                       
Query: 301 gtattctttttccataggaacaaagtagccaaggcattgccttgaatatcatagataact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gtattctttttccataggaacaaagtagccaaggcattgccttgaatatcatagataact 225

                                                                       
Query: 361 cttagcaaattaatcaatataaaatttgttattttctctttttatatttttgcttctttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 cttagcaaattaatcaatataaaatttgttattttctctttttatatttttgcttctttt 165

                                      
Query: 421 ttttttttcctgatggatcttttagat 447
           |||||||||||||||||||||||||||
Sbjct: 164 ttttttttcctgatggatcttttagat 138


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)