BAC Information

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BAC

Clone NameMSMg01-476K15
Chromosome7 (Build37)
Map Location 64,749,349 - 64,749,875
singlet/doubletsinglet
Overlap geneGabra5
Upstream genep, LOC100040839, Gabrg3
Downstream geneGabrb3, EG668807, LOC434189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476K15.T7 (MSMg01no476_k15.b1)MSMg01-476K15.TJ (MSMg01no476_k15.g1)
ACCAG558201AG558202
length754737
length of high quality
(start - end)
240 (76 - 315)527 (79 - 605)
definitionCHROMAT_FILE: MSMg01no476_k15.b1 PHD_FILE: MSMg01no476_k15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:50 2005CHROMAT_FILE: MSMg01no476_k15.g1 PHD_FILE: MSMg01no476_k15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAATACGATCCGCGGAAT
TCTCACCTTACCCAAACCGAATGGNAGAGAAGCACTTGAAAAAATGTTCA
ACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCA
CCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAT
GCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGAGAG
TGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAA
ACTGGACATAGTACTATTTTTTTGATCCAGCAATACCTCTCCTGGGCATA
TATCCAGAAGATGCCCCAACAGGTAAGAAGGATACATGCTCCACTATGTT
CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCC
CCTCAACAGAGGAATGGATACAGAATATGTGGTACATCTACACAATGGAG
TACTACTCAGCTATTATAAAGAATGAATTTATGAAATTCCTAGCCTACAG
GACGGATCTGGACGGCATCATCCTGAGTGTGGTAACACATTCCCTAAGAA
ACTCCTCTATATTGTATTCTCCGATCACTGGATATTTACCCCAACCCATG
ATACCTTTACATACTATATAATTTGCTATTTACCTTAAACTCTTCAATAT
TGATTATTGACTGCGCCATCTAATGCCCTCTCCCAAATTTGCACACCACC
CTCC
NTCGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGCTGATTTCATTTATTGA
ACACATATTTTAATTCATCACTTTTTATTTTATGTGCATGGCTATTTTGC
CTGCATGTATGTTTCTGTAACAGGTACATGACTGGCGCCTACAGAAGCCA
GAAAATGGTATTAGGTTATTTGAAACTGGAGTGATGGAGGCTGTGAATCA
CCATGTGGGAGCTAGGAATTGAATCTAAGTCCTCTGGAAAAACAGGAAGT
ATTCTTAACTTCTGAGACATCTCTTCAGCTAGACACAATTTTTTAAGATA
TAGTTTAAAATGTCTACTCACACTACTTATCCATAATGACACTTCTCTTG
GAGAAACTTCAGTATCTTCCCTGCCCTAATATAATTTCCTCCTGTACTGA
TCTTTAGTTCTTCCTATAGCAGCATTCAGTGCTGCTGGGTCTGGAATATT
TTCTATGCTATATTAAATAGGCATGTACTAAGAGGAGCAGAAAAAAAGAC
ATCAAGAAAAGAAGATCTCTAGAAATACCTCTTAGGGCAGAGGCAGGGCT
TCATCTAGCTTCTGTTGCATTGGGAGTTTTCTTTGCTTATTTTCCATAAT
CCACCTGATAAATGAAACAACTGCAATAAGTGGCCGTTCAATGTCCTATT
CTCACAGCACTGAGGAGATTGTCAGCATCTGTTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_k15.g1 MSMg01no476_k15.g1 CHROMAT_FILE:
MSMg01no476_k15.g1 PHD_FILE: MSMg01no476_k15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:50 2005
         (527 letters)



>mm_chr7_64749149_64750075
          Length = 927

 Score =  980 bits (507), Expect = 0.0
 Identities = 522/527 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagctgatttcatttattgaacacatattttaattcatcactttttattttatgtgca 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 cagagctgatttcatttattgaacacatattttaattcattactttttattttatgtgca 260

                                                                       
Query: 61  tggctattttgcctgcatgtatgtttctgtaacaggtacatgactggcgcctacagaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 tggctattttgcctgcatgtatgtttctgtaacaggtacatgactggtgcctacagaagc 320

                                                                       
Query: 121 cagaaaatggtattaggttatttgaaactggagtgatggaggctgtgaatcaccatgtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaaaatggtattaggttatttgaaactggagtgatggaggctgtgaatcaccatgtgg 380

                                                                       
Query: 181 gagctaggaattgaatctaagtcctctggaaaaacaggaagtattcttaacttctgagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagctaggaattgaatctaagtcctctggaaaaacaggaagtattcttaacttctgagac 440

                                                                       
Query: 241 atctcttcagctagacacaattttttaagatatagtttaaaatgtctactcacactactt 300
           | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agctctccagctagacacaattttttaagatatagtttaaaatgtctactcacactactt 500

                                                                       
Query: 301 atccataatgacacttctcttggagaaacttcagtatcttccctgccctaatataatttc 360
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 atccataatgacacttctcttggaaaaacttcagtatcttccctgccctaatataatttc 560

                                                                       
Query: 361 ctcctgtactgatctttagttcttcctatagcagcattcagtgctgctgggtctggaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcctgtactgatctttagttcttcctatagcagcattcagtgctgctgggtctggaata 620

                                                                       
Query: 421 ttttctatgctatattaaataggcatgtactaagaggagcagaaaaaaagacatcaagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttctatgctatattaaataggcatgtactaagaggagcagaaaaaaagacatcaagaa 680

                                                          
Query: 481 aagaagatctctagaaatacctcttagggcagaggcagggcttcatc 527
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagaagatctctagaaatacctcttagggcagaggcagggcttcatc 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)