BAC Information

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BAC

Clone NameMSMg01-476M12
Chromosome7 (Build37)
Map Location 16,547,814 - 16,742,120
singlet/doubletdoublet
Overlap geneEhd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2
Upstream geneLOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2
Downstream geneMrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476M12.T7 (MSMg01no476_m12.b1)MSMg01-476M12.TJ (MSMg01no476_m12.g1)
ACCAG558291AG558292
length786736
length of high quality
(start - end)
241 (75 - 315)244 (73 - 316)
definitionCHROMAT_FILE: MSMg01no476_m12.b1 PHD_FILE: MSMg01no476_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:00 2005CHROMAT_FILE: MSMg01no476_m12.g1 PHD_FILE: MSMg01no476_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,547,814 - 16,548,051)(16,741,879 - 16,742,120)
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGTACCGGATCCGCNGG
AATCCTCCCTGACGCTACCCCCACCTCCAGCTGGCAGAGCACTGCAACCG
TTTCTGCAGCTGCCTCCTGCGTTTCTCCCTCGGGGCTGCTCTGCTGGATA
GCGGCCAGGGGCACTGGCACTTTTGGAGCCAAAGCCCTGCCCTGGCCCTG
CCTCCCGCCTGGCCTTGGGTCCCCTCTGCCCCACACTGTTGCCTCCTTTT
TCCTAATTCCCTGGCAGAGACCTAGAGATGAGGGTGGTGTCAGGGATGGA
CAGAGGGGCTTTTGACTCGTTACTGGAATGGGGGAAGCGTGGGGGAGGGG
ATTTTTTTGTCCCCCGATCGGGACTAAGATTCCACGCATATCGTTCATTG
CCCGCCCCTCCCTTTTTTATTTCTCCTCCCCTCCCCCCTTCTTATTTTTT
CGCCTACCCTTCTTTCCCCTCCTTTGCTACTCTACCTCCCCTCCTTCTAT
CTTTTTTTTTCCCCCCTTTCTTCTTCCCCTCTCTCTTTTTCTTCCCCCCC
CTCCCGGATACTTTTTTATCTTTAAACCCTGCCCATATCCTTTCCTCTTT
CTCTTTCTTCCCTTTTATTGCTTCTCCTTTCCTTCTCTCCCTTTCACTCT
TCTCGCTCCCACCCCATTTTTTTTTTTTTTCTCCCCTCCCCCCCTTTTCC
TTTTTCCCCCTTTTTTTTTTTTCTCCCCCCTTTTCACCCTTTTTTTTCTC
CTCCCTATTCTCCCTATTTCCTTTTTTCCTTTCTTN
CCGATGCAGTGNNGTAGGCTGGGGGNCGCCGGTCAATATCATTTAGGTGA
ACTATAGAATGACAAAAACAATTCCTTGCTAAGGGAGTGTTGGGTCCAGG
TCAATTTACTAACTTCCCCAGCATCCCTTGCAGCCAAAAGAGTGTTGAGC
ATAGATAAATCCATTTACTTTCCCAGAACCCCTCAAAGCTAGAGGAGGCC
ATAAATCCCTTTCTAAAAGCACTCGGTGTCTCACAAACCCTGACCACTAT
ATATGACCATGTCTTGAGCTAAAAATAGTCATTTCCTCAAAAGTCCTCAA
AACCACCGACAGCCTTCTGNACTTCTAGAAATAATCACTGCAGTGGCCTG
GGGTTCTGTTTCATAGGCAGACTGCCTGCCTACAATGTGAAAGGGTCTGA
GTTCCATCCTTAGCATCATGGACCAAATGCACACCAAGATTTCACAGTCG
CCTTAACACAACTGGCTTTCCCAGAGTCTCCAGGAGCAAGACAGAGACAA
ACACCCAGCTAAAATTAGCTAATCTCCCAGAATTCCTTGAGGTTAGCAAC
AGCCATGCCCTCATATAACAATATGCACTCTCGCAGGGTGTGGTGGCAAA
CGCCTTTAATCCCAGCATTCTGCACCCCCACAGGCTCGTGCACCTATTTT
TCTTTTTTCGCCTGGTCCACTTAATGAGTTTCCAGTATGTCCCCGCCCTT
ATGATATTTCCCATCCCCCATATCCCCATCACCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_m12.b1 MSMg01no476_m12.b1 CHROMAT_FILE:
MSMg01no476_m12.b1 PHD_FILE: MSMg01no476_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:00 2005
         (241 letters)



>mm_chr7_16547614_16548254
          Length = 641

 Score =  437 bits (226), Expect = e-127
 Identities = 235/238 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccagctggcagagcactgcaaccgtttctgcagctgcctcctgcgtttctccctcggg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ctccagctggcagagcactgcaaccgtttctgcagctgcctcctgtgtttctccctcggg 260

                                                                       
Query: 61  gctgctctgctggatagcggccaggggcactggcacttttggagccaaagccctgccctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgctctgctggatagcggccaggggcactggcacttttggagccaaagccctgccctg 320

                                                                       
Query: 121 gccctgcctcccgcctggccttgggtcccctctgccccacactgttgcctcctttttcct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 321 gccctgcctcccgcctggccttgggtcccctctgccccacactgttgcctcctttgccct 380

                                                                     
Query: 181 aattccctggcagagacctagagatgagggtggtgtcagggatggacagaggggcttt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattccctggcagagacctagagatgagggtggtgtcagggatggacagaggggcttt 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no476_m12.g1 MSMg01no476_m12.g1 CHROMAT_FILE:
MSMg01no476_m12.g1 PHD_FILE: MSMg01no476_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:00 2005
         (244 letters)



>mm_chr7_16741679_16742322
          Length = 644

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccttgctaagggagtgttgggtccaggtcaatttactaacttccccagcatcccttgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tccttgctaagggagtgttgggtccaggtcaatttactaacttccccagcatcccttgca 383

                                                                       
Query: 61  gccaaaagagtgttgagcatagataaatccatttactttcccagaacccctcaaagctag 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gacaaaagagtgttgagcatagataaatccatttactttcccagaacccctcaaagctag 323

                                                                       
Query: 121 aggaggccataaatccctttctaaaagcactcggtgtctcacaaaccctgaccactatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 322 aggaggccataaatccctttctaaaagcactcggtgtctcacaaaccctgaccactagag 263

                                                                       
Query: 181 atgaccatgtcttgagctaaaaatagtcatttcctcaaaagtcctcaaaaccaccgacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atgaccatgtcttgagctaaaaatagtcatttcctcaaaagtcctcaaaaccaccgacag 203

             
Query: 241 cc 242
           ||
Sbjct: 202 cc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)