BAC Information

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BAC

Clone NameMSMg01-476N18
Chromosome7 (Build37)
Map Location 91,625,470 - 91,625,672
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666160, Tmc3, Stard5, Il16, Phgdh-ps1, LOC666170, 1700026D08Rik, Mesdc1, Mesdc2, 9930013L23Rik, 2210412D01Rik, Arnt2
Downstream geneLOC100039239, Fah, Zfand6, 2610206C17Rik, EG620480, Olfr291, LOC666276, Olfr290, ENSMUSG00000070600, F830104D24Rik, LOC620641, EG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69, LOC330581, LOC100039339
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476N18.T7 (MSMg01no476_n18.b1)MSMg01-476N18.TJ (MSMg01no476_n18.g1)
ACCAG558349AG558350
length781808
length of high quality
(start - end)
491 (67 - 557)203 (73 - 275)
definitionCHROMAT_FILE: MSMg01no476_n18.b1 PHD_FILE: MSMg01no476_n18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:06 2005CHROMAT_FILE: MSMg01no476_n18.g1 PHD_FILE: MSMg01no476_n18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAGACTTTCCGAGACCCTGTCACAAACAAACAGGCAAGGTGAATGA
TGACACCTGAGATGGCCCTTTGGCCTGCACATATATGTACATACATGCAC
ACAGCCCTGTATCTGTATATACACAAACATACATGTGTACAGACACATAG
AGTAGTACATCTTGGAAAACCTCCAGAATTAATCATGGAGCTAGCTCTTC
CTCAGTTTCTGTTCAGAACTGCATAGCACTCAGTTGTGCTGATACGCTGT
GTCTATCCAATCATCCCTCATTTGTGAATGCTGAGTTTTCCGTACGGTGC
TGTTAGAAGCAATGCACATTCTAGCATATATGTCTCTTTTTAATCACTGG
TATTGTACCTGTACGATGGTAGTTTTCTAGAAGTGGGATTGCTGAGTCAA
ATATAAATACACTTGTGTTTTGTTAAATTCCCTCCAGAAGGGCTGTATCA
GTTTGCCTTCCAGCCACTGATGTCTGAAAGTCTGTTTCTCTGTGTTCTTG
ACTAACAGAATGTGTTGTCAGTTTGACAGGCGAGAATCCATGTCTTAATT
TGCATGTCAGTAATTACAGTTCCGTTCCAGCACTGCTTTATGNTTAGAAC
TGATTTACTTTTGAGTTTTAATGACTTGCCCGTTTGTGTCTTTCCCCCAT
GTCCTGGGGTGATCCCCGTTTTCTACCCCCCCAGCCGCTTTTCCTACACA
GTTTTTTTTTTTCCTCTAAAGCTTTCAATTG
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAGAGAGAGGAGATTTAGGGGCCCCTGG
TATATAGATAAGAGTAGAAAATGAGTATGGGGGACAGGGGAAGGAGAATG
AGAAAAGCCTGAAGGAACTGTAGCTTTTAATGGGTTATCAAGAAGAGAAG
AACCAGAAAAGGTGCACTGGGGAGGGGATAAGCAATGTGTGAATGTAAAG
TTATTACAAAAGTGTGTAGCTAAAGATGCACAAGATGGGCAAAGATATGT
ATGACAGTGTGTGTGGTTTTCTGTTTCCCAGGCAAAGCCAGCCATGAATT
ATACCCAGCCTTTACCCTTTTAACATAAAAGATTTGATTAGGACACTGCC
AATCTTGTTCATTTTCAGACTGTCCATGTATAATTATAACTATATTTCTG
TACCTATCTATTTAATCTTCACTTTCTGTATAGCCCACTAACCTCCGGCT
TCCTTTACTTTCCTCCACTCTCATATCTTTTACCTCCCCCTCCTTTTTAT
ATCCTCCCTCTTCTTCCCCGTTTTTTCTTCTCCTATTTTCCTCTCTTTCC
TTCTTCTCCCACCTCTCCCCTCTTTCTTTCCCCTCTCTTTGTCTCTTCCT
CCCTTCTTCTCCCCTATTTTTTTTTTTTCCTCCCTCTCTTTCCTTTTTTT
TCTTTCCTATTTCTTTTCTTTCTCTCTTATTCTCCTTTCCTTTCTCTCCT
CTTTTTTCACTTTTTTCCCCCTTCTTTTTCTCCCCCTTTTTATTTACCCT
TCACCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_n18.g1 MSMg01no476_n18.g1 CHROMAT_FILE:
MSMg01no476_n18.g1 PHD_FILE: MSMg01no476_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:06 2005
         (203 letters)



>mm_chr7_91625270_91625872
          Length = 603

 Score =  369 bits (191), Expect = e-107
 Identities = 200/203 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagagagaggagatttaggggcccctggtatatagataagagtagaaaatgagtatgggg 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aagagagaggagagttaggggcccctggtatatagataagagtagaaaatgagtatgggg 344

                                                                       
Query: 61  gacaggggaaggagaatgagaaaagcctgaaggaactgtagcttttaatgggttatcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gacaggggaaggagaatgagaaaagcctgaaggaactgtagcttttaatgggttatcaag 284

                                                                       
Query: 121 aagagaagaaccagaaaaggtgcactggggaggggataagcaatgtgtgaatgtaaagtt 180
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 283 aagagaagaaccagaaaaagtgcactggggaggggataagcaatgtgtgaatgtaaaggt 224

                                  
Query: 181 attacaaaagtgtgtagctaaag 203
           |||||||||||||||||||||||
Sbjct: 223 attacaaaagtgtgtagctaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 603
Length adjustment: 8
Effective length of query: 195
Effective length of database: 595
Effective search space:   116025
Effective search space used:   116025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)