BAC Information

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BAC

Clone NameMSMg01-476O08
Chromosome7 (Build37)
Map Location 140,693,973 - 140,694,214
singlet/doubletsinglet
Overlap genenone
Upstream geneOat, Nkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2, LOC668747
Downstream gene4930404H21Rik, LOC100043237, 2700050L05Rik, Mmp21, Uros, Bccip, Dhx32, LOC100043695, Fank1, Adam12, A130023I24Rik, 4933400E14Rik, LOC100043248, LOC100043699
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476O08.T7 (MSMg01no476_o08.b1)MSMg01-476O08.TJ (MSMg01no476_o08.g1)
ACCAG558377AG558378
length750778
length of high quality
(start - end)
242 (77 - 318)139 (84 - 222)
definitionCHROMAT_FILE: MSMg01no476_o08.b1 PHD_FILE: MSMg01no476_o08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:09 2005CHROMAT_FILE: MSMg01no476_o08.g1 PHD_FILE: MSMg01no476_o08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCC
GCGGAATTCCTATTTTTCTTGCAGCGAGTCTTTCATATTAAATATGTCAT
TCCCTCACCACACCTAGTCACCCAGGTCACCACGACAGCCTCAGTGAACT
TCCACACTTATATTAACTCTATGAAATGATCAGAAGAAAAATTCTGATAA
AGAGCTTCATAACGCTGACAGGAGTGTTAACTTTCCAGAGCCTCATTGGA
AGGCACCAAAGCTCACAGAAAGGCACCACAGCACTCTCTCTAACTCAGCC
TGACTGCCTCAGTTTACCCTCTTTTTTCTCCTTTCTCCATGGCAGCTGGC
CAGTATAGGTGAGGTGTGAGGTGAGAAGGCTAACTCCCTCCTCTTTTTGC
CCTGTCTAAAGCTGAGACTCTTTCCAGCCCCACGAATGCTTAGACTTTCA
CCACTGCTTCCTGTGGTTCTGTGGCAGCTATTACACTCTCAGTGAGGACA
TTTCTTATCCTTCCCATCTGTGTTACACCGGCAGACTTTTGTATGTGCTT
AGCTCCCCACTGTACTTTCTGAACCTCACCCCCATGTTGTCCTTAATTAT
CTTATTCCTGTACCATATCCCTACCTGCTCTTTTGTTTTTATCGCCTCTA
TGCCCCCCTTCATCTTGTTCCCCCGATCTTTCATTCACCCCCGTTTTGCC
CCTTGCTTTTATTCCACCCTTTAACCCTTTGTCCCTTTATACCTTCCCTG

CCCTCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGTCTAGCGAAATTCTGCAGNTCAATGTCCAGAGGCAGA
GCTTTCTTACATAACCTTTCTGACAAACAGCCTTTTAGATACTTCTGGAA
CCTTCTATATGGCCAACATGTCTGTTTTGTTTTGTTTTGTTTTGTTTTGT
TTTGTTGTTGTTGTTGTTTTTCCCACACAGGCTTTCTCTGTATAGTCTTT
TTTTTCCTATAATTTTCTTTGCACACCTCCCTGTCCTCTTACTCATAAAT
CAGCCTGCCCCTGTTTTTTCTGTTTTGGCACNAACGGCGTGCGCCATCAT
GCCCTGCTTTTTGTCTTTCTCGACCTATCTTATTCTATTATTCTCGGCAT
ATCCCTGTCTCATGCTTGATTCTTTTCCTCTTATCCTCCTGTTACTTCTC
TTCTCTTTTTTCACATTTACCCTTCTATTTCCCTCCTTTCCCTTCTACTT
ATTTCCCTTTTTATTTTCCCCCTTCCACCTCCCTGTTTTCCTCTTTTTCT
CACCCGCTTTTCCTCCTTTTTCCCCTTTTTTTTTCTCCCCCCTTTCTTTC
CTTTCCTTTCTTCCTTCCCTCTTTCCCCCTTTCTTCCCTCTTCCCCCTTT
TCTTTTTCCGCCTTTTTCCTCCTCTTTTTTCTCTCTCCTTCTTTTTTCTT
ACTCTCCTCTCTTCTTTTTCCTCCCCCCCCTTTTCTCTTTTATTCCTCCC
CTCCATCTTTTTTCTCCTCTCTCCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_o08.b1 MSMg01no476_o08.b1 CHROMAT_FILE:
MSMg01no476_o08.b1 PHD_FILE: MSMg01no476_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:09 2005
         (242 letters)



>mm_chr7_140693773_140694414
          Length = 642

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtctttcatattaaatatgtcattccctcaccacacctagtcacccaggtcaccacgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agtctttcatattaaatatgtcattccctcaccacacctagtcacccaggtcaccacgac 383

                                                                       
Query: 61  agcctcagtgaacttccacacttatattaactctatgaaatgatcagaagaaaaattctg 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agcctcagtgaacttccacccttatattaactctatgaaatgatcagaagaaaaattctg 323

                                                                       
Query: 121 ataaagagcttcataacgctgacaggagtgttaactttccagagcctcattggaaggcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ataaagagcttcataacgctgacaggagtgttaactttccagagcctcattggaaggcac 263

                                                                       
Query: 181 caaagctcacagaaaggcaccacagcactctctctaactcagcctgactgcctcagttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 caaagctcacagaaaggcaccacagcactctctctaactcagcctgactgcctcagttta 203

             
Query: 241 cc 242
           ||
Sbjct: 202 cc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)