MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-476P06
Chromosome	7 (Build37)
Map Location	17,578,452 - 17,578,582
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835
Downstream gene	LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29, LOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14, EG381852, Ceacam11
Link	Open Mouse BAC browser

Click to get alignment info.

name	Gltscr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:243842 MGI:2154263
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zfp541 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666528 MGI:3647699
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs, 1 Protein

name	Napa (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108124 MGI:104563
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kptn (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70394 MGI:1890380
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc8a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110891 MGI:107996
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mrg2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17537 MGI:108519
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dhx34 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71723 MGI:1918973
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gpr77 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319430 MGI:2442013
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C5ar1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12273 MGI:88232
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2610014I16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66300 MGI:1913550
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 45 ESTs

name	Ccdc9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:243846 MGI:1921443
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bbc3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170770 MGI:2181667
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sae1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56459 MGI:1929264
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC057627 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:330474 MGI:2682314
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem160 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69094 MGI:1916344
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Npas1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18142 MGI:109205
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC629352 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:629352
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Grlf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:232906 MGI:1929494
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC670915 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:670915
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 15 Proteins pseudo : _no_value

name	LOC100038912 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038912
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ceacam15 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:101434 MGI:2141810
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 17 ESTs, 3 Proteins

name	EG666641 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666641 MGI:3643592
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 31 ESTs, 2 Proteins

name	LOC434127 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:434127
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1266 ESTs, 11 Proteins pseudo : _no_value

name	Ceacam9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26368 MGI:1347247
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ap2s1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:232910 MGI:2141861
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc1a5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20514 MGI:105305
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fkrp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:243853 MGI:2447586
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Strn4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:97387 MGI:2142346
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Prkd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:101540 MGI:2141917
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dact3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:629378 MGI:3654828
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gng8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14709 MGI:109163
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ptgir (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19222 MGI:99535
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Calm3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12315 MGI:103249
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG434128 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434128 MGI:3645856
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 11 ESTs, 1 Protein

name	0710005I19Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71691 MGI:1918941
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042835 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042835
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 7 Proteins

name	LOC434130 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:434130
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 2 Proteins

name	Ppp5c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19060 MGI:102666
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hif3a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53417 MGI:1859778
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Psg16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26436 MGI:1347249
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042844 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042844
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC640145 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:640145
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 398 ESTs, 5 Proteins pseudo : _no_value

name	Ceacam3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:384557 MGI:3646296
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 23 Proteins

name	Psg29 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:114872 MGI:1891361
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC414361 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:414361
definition	note : vitamin K epoxide reductase complex, subunit 1-like 1 pseudogene 2 pseudo : _no_value

name	LOC671132 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:671132
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 22 Proteins pseudo : _no_value

name	LOC100042868 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042868
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs

name	Psg-ps1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:232919 MGI:1347253
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA pseudo : _no_value

name	LOC666767 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666767
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 10 Proteins pseudo : _no_value

name	Psg30 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73250 MGI:1920500
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ppia-ps7_184.1 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:606534
definition	note : peptidylprolyl isomerase A pseudogene 7_184.1 pseudo : _no_value

name	Ceacam14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67084 MGI:1914334
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG381852 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381852 MGI:3647191
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ceacam11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66996 MGI:1914246
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gltscr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487236 GeneID:243842 MGI:2154263
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glioma tumor suppressor candidate region gene 1 transcript_id : NM_001081418.1

name	Zfp541 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94379480 GeneID:666528 MGI:3647699
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs, 1 Protein product : zinc finger protein 541 transcript_id : XM_984387.1

name	Napa (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385903 GeneID:108124 MGI:104563
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : N-ethylmaleimide sensitive fusion protein attachment protein alpha transcript_id : NM_025898.2

name	Kptn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19526915 GeneID:70394 MGI:1890380
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kaptin transcript_id : NM_133727.1

name	Slc8a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254192 GeneID:110891 MGI:107996
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 8 (sodium/calcium exchanger), member 2 transcript_id : NM_148946.2

name	Mrg2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116642899 GeneID:17537 MGI:108519
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myeloid ecotropic viral integration site-related gene 2 transcript_id : NM_008627.2

name	Dhx34 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:52345419 GeneID:71723 MGI:1918973
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DEAH (Asp-Glu-Ala-His) box polypeptide 34 transcript_id : NM_027883.2

name	Gpr77 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802432 GeneID:319430 MGI:2442013
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G protein-coupled receptor 77 transcript_id : NM_176912.3

name	C5ar1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76096368 GeneID:12273 MGI:88232
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : complement component 5a receptor 1 transcript_id : NM_007577.3

name	2610014I16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149256503 GeneID:66300 MGI:1913550
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 45 ESTs product : RIKEN cDNA 2610014I16 gene transcript_id : XM_001480001.1

name	Ccdc9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:26986618 GeneID:243846 MGI:1921443
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 9 transcript_id : NM_172297.1

name	Bbc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:18875397 GeneID:170770 MGI:2181667
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Bcl-2 binding component 3 transcript_id : NM_133234.1

name	Sae1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892402 GeneID:56459 MGI:1929264
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SUMO1 activating enzyme subunit 1 transcript_id : NM_019748.2

name	BC057627 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38348503 GeneID:330474 MGI:2682314
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC057627 transcript_id : NM_198631.1

name	Tmem160 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58037142 GeneID:69094 MGI:1916344
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 160 transcript_id : NM_026938.1

name	Npas1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679099 GeneID:18142 MGI:109205
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neuronal PAS domain protein 1 transcript_id : NM_008718.1

name	Grlf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114326533 GeneID:232906 MGI:1929494
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glucocorticoid receptor DNA binding factor 1 transcript_id : NM_172739.4

name	LOC100038912 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149256077 GeneID:100038912
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hypothetical protein LOC100038912 transcript_id : XM_001471941.1

name	Ceacam15 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149256512 GeneID:101434 MGI:2141810
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 17 ESTs, 3 Proteins product : CEA-related cell adhesion molecule 15 transcript_id : XM_145393.5

name	EG666641 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149256514 GeneID:666641 MGI:3643592
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 31 ESTs, 2 Proteins product : predicted gene, EG666641 transcript_id : XM_985121.2

name	Ceacam9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142348770 GeneID:26368 MGI:1347247
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CEA-related cell adhesion molecule 9 transcript_id : NM_011927.2

name	Ap2s1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38348471 GeneID:232910 MGI:2141861
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adaptor-related protein complex 2, sigma 1 subunit transcript_id : NM_198613.1

name	Slc1a5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114326473 GeneID:20514 MGI:105305
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 1 (neutral amino acid transporter), member 5 transcript_id : NM_009201.2

name	Fkrp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:89941471 GeneID:243853 MGI:2447586
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fukutin related protein transcript_id : NM_173430.2

name	Strn4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:89886481 GeneID:97387 MGI:2142346
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : striatin, calmodulin binding protein 4 transcript_id : NM_133789.2

name	Strn4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:89886485 GeneID:97387 MGI:2142346
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : striatin, calmodulin binding protein 4 transcript_id : NM_001039878.1

name	Prkd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803262 GeneID:101540 MGI:2141917
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase D2 transcript_id : NM_178900.3

name	Dact3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126090619 GeneID:629378 MGI:3654828
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dapper homolog 3, antagonist of beta-catenin (xenopus) transcript_id : NM_001081655.1

name	Gng8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84579910 GeneID:14709 MGI:109163
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : guanine nucleotide binding protein (G protein), gamma 8 subunit transcript_id : NM_010320.3

name	Ptgir (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142360026 GeneID:19222 MGI:99535
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : prostaglandin I receptor (IP) transcript_id : NM_008967.2

name	Calm3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114326464 GeneID:12315 MGI:103249
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calmodulin 3 transcript_id : NM_007590.3

name	EG434128 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94379492 GeneID:434128 MGI:3645856
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 11 ESTs, 1 Protein product : predicted gene, EG434128 transcript_id : XM_485870.4

name	0710005I19Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56119167 GeneID:71691 MGI:1918941
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 0710005I19 gene transcript_id : NM_001007569.1

name	LOC100042835 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149256288 GeneID:100042835
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 7 Proteins product : similar to Paraneoplastic antigen MA2 transcript_id : XM_001478913.1

name	LOC434130 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149256530 GeneID:434130
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 1 Protein product : hypothetical LOC434130, transcript variant 2 transcript_id : XM_001480113.1

name	LOC434130 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149256528 GeneID:434130
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 2 Proteins product : hypothetical LOC434130, transcript variant 1 transcript_id : XM_001480107.1

name	Ppp5c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33859593 GeneID:19060 MGI:102666
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein phosphatase 5, catalytic subunit transcript_id : NM_011155.1

name	Hif3a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:8393527 GeneID:53417 MGI:1859778
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hypoxia inducible factor 3, alpha subunit transcript_id : NM_016868.1

name	Psg16 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46849784 GeneID:26436 MGI:1347249
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pregnancy specific glycoprotein 16 transcript_id : NM_007676.3

name	Ceacam3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149256541 GeneID:384557 MGI:3646296
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 23 Proteins product : carcinoembryonic antigen-related cell adhesion molecule 3 transcript_id : XM_357710.6

name	Psg29 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142356091 GeneID:114872 MGI:1891361
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pregnancy-specific glycoprotein 29 transcript_id : NM_054064.2

name	LOC100042868 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149256298 GeneID:100042868
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs product : similar to pol protein transcript_id : XM_001478955.1

name	Psg30 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142384595 GeneID:73250 MGI:1920500
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pregnancy-specific glycoprotein 30 transcript_id : NM_028480.2

name	Ceacam14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366076 GeneID:67084 MGI:1914334
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CEA-related cell adhesion molecule 14 transcript_id : NM_025957.3

name	EG381852 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347954 GeneID:381852 MGI:3647191
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG381852 transcript_id : NM_001034877.2

name	Ceacam11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112821666 GeneID:66996 MGI:1914246
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CEA-related cell adhesion molecule 11 transcript_id : NM_023289.2

name	Gltscr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487237 GeneID:243842 MGI:2154263
definition	codon_start : 1 product : glioma tumor suppressor candidate region gene 1 protein_id : NP_001074887.1

name	Zfp541 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94379481 GeneID:666528 MGI:3647699
definition	codon_start : 1 product : zinc finger protein 541 protein_id : XP_989481.1

name	Napa (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385392 CCDS:CCDS20843.1 GeneID:108124 MGI:104563
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005794 - Golgi apparatus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005478 - intracellular transporter activity [Evidence IEA]; GO:0019905 - syntaxin binding [Evidence IDA] GO_process : GO:0045176 - apical protein localization [Evidence IMP]; GO:0007420 - brain development [Evidence IMP]; GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO:0006886 - intracellular protein transport [Evidence IMP]; GO:0030182 - neuron differentiation [Evidence IMP]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : hydrocephaly with hop gait product : N-ethylmaleimide sensitive fusion protein attachment protein alpha protein_id : NP_080174.1

name	Kptn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19526916 CCDS:CCDS20844.1 GeneID:70394 MGI:1890380
definition	GO_function : GO:0003779 - actin binding [Evidence IEA] codon_start : 1 exception : mismatches in translation note : actin-binding protein product : kaptin protein_id : NP_598488.1

name	Slc8a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22507355 CCDS:CCDS20845.1 GeneID:110891 MGI:107996
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA] GO_function : GO:0005386 - carrier activity [Evidence IEA] GO_process : GO:0007154 - cell communication [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : solute carrier family 8 (sodium/calcium exchanger), member 2 protein_id : NP_683748.1

name	Mrg2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116642900 GeneID:17537 MGI:108519
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : myeloid ecotropic viral integration site-related gene 2 protein_id : NP_032653.2

name	Dhx34 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:52345420 GeneID:71723 MGI:1918973
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : DEAH (Asp-Glu-Ala-His) box polypeptide 34 protein_id : NP_082159.2

name	Gpr77 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28892701 GeneID:319430 MGI:2442013
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : G protein-coupled receptor 77 protein_id : NP_795886.1

name	C5ar1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:59814327 CCDS:CCDS20846.1 GeneID:12273 MGI:88232
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006956 - complement activation [Evidence IEA]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : C5a anaphylatoxin receptor; C5a ligand product : complement component 5, receptor 1 protein_id : NP_031603.2

name	2610014I16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149256504 GeneID:66300 MGI:1913550
definition	codon_start : 1 product : hypothetical protein LOC66300 protein_id : XP_001480051.1

name	Ccdc9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:26986619 GeneID:243846 MGI:1921443
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0008236 - serine-type peptidase activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 product : coiled-coil domain containing 9 protein_id : NP_758501.1

name	Bbc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18875398 CCDS:CCDS20847.1 GeneID:170770 MGI:2181667
definition	GO_component : GO:0005740 - mitochondrial envelope [Evidence ISS]; GO:0005739 - mitochondrion [Evidence ISS] [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0006915 - apoptosis [Evidence IEA] [Evidence ISS]; GO:0006919 - caspase activation [Evidence ISS]; GO:0006917 - induction of apoptosis [Evidence ISS]; GO:0030308 - negative regulation of cell growth [Evidence ISS]; GO:0045926 - negative regulation of growth [Evidence ISS]; GO:0042981 - regulation of apoptosis [Evidence IEA]; GO:0001836 - release of cytochrome c from mitochondria [Evidence ISS] codon_start : 1 note : BH3-only product : Bcl-2 binding component 3 protein_id : NP_573497.1

name	Sae1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9790247 CCDS:CCDS20848.1 GeneID:56459 MGI:1929264
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0008022 - protein C-terminus binding [Evidence ISS]; GO:0046982 - protein heterodimerization activity [Evidence ISS]; GO:0004839 - ubiquitin activating enzyme activity [Evidence ISS] GO_process : GO:0006464 - protein modification [Evidence IEA]; GO:0016567 - protein ubiquitination [Evidence ISS]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : SUMO-1 activating enzyme subunit 1; ubiquitin-like (sentrin) activating enzyme E1A; ubiquitin-like 1 (sentrin) activating enzyme E1A product : ubiquitin-like 1 (sentrin) activating enzyme subunit 1 protein_id : NP_062722.1

name	BC057627 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38348504 GeneID:330474 MGI:2682314
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC330474 protein_id : NP_941033.1

name	Tmem160 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037143 CCDS:CCDS20849.1 GeneID:69094 MGI:1916344
definition	codon_start : 1 product : hypothetical protein LOC69094 protein_id : NP_081214.1

name	Npas1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679100 CCDS:CCDS20850.1 GeneID:18142 MGI:109205
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0000155 - two-component sensor activity [Evidence IEA] GO_process : GO:0007610 - behavior [Evidence IMP]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0000160 - two-component signal transduction system (phosphorelay) [Evidence IEA] codon_start : 1 product : neuronal PAS domain protein 1 protein_id : NP_032744.1

name	Grlf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75677442 CCDS:CCDS20851.1 GeneID:232906 MGI:1929494
definition	GO_component : GO:0015629 - actin cytoskeleton [Evidence IDA]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]; GO:0005096 - GTPase activator activity [Evidence TAS]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0001747 - eye development (sensu Mammalia) [Evidence IMP]; GO:0030900 - forebrain development [Evidence IMP]; GO:0007229 - integrin-mediated signaling pathway [Evidence TAS]; GO:0045786 - negative regulation of progression through cell cycle [Evidence IEA]; GO:0001843 - neural tube closure [Evidence IMP]; GO:0008360 - regulation of cell shape [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : P190 RhoGAP product : glucocorticoid receptor DNA binding factor 1 protein_id : NP_766327.3

name	LOC100038912 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149256078 GeneID:100038912
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001471991.1

name	Ceacam15 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149256513 GeneID:101434 MGI:2141810
definition	codon_start : 1 product : CEA-related cell adhesion molecule 15 protein_id : XP_145393.4

name	EG666641 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149256515 GeneID:666641 MGI:3643592
definition	codon_start : 1 product : similar to Ac2-210 protein_id : XP_990215.2

name	Ceacam9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753400 CCDS:CCDS20852.1 GeneID:26368 MGI:1347247
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] GO_process : GO:0007565 - pregnancy [Evidence IEA] codon_start : 1 note : carcinoembryonic antigen 5 product : CEA-related cell adhesion molecule 9 protein_id : NP_036057.1

name	Ap2s1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38348472 GeneID:232910 MGI:2141861
definition	GO_component : GO:0030122 - AP-2 adaptor complex [Evidence ISS] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : adaptor-related protein complex 2, sigma 1 subunit protein_id : NP_941015.1

name	Slc1a5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114326474 GeneID:20514 MGI:105305
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005386 - carrier activity [Evidence IEA]; GO:0015175 - neutral amino acid transporter activity [Evidence IDA]; GO:0017153 - sodium:dicarboxylate symporter activity [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA] GO_process : GO:0006835 - dicarboxylic acid transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : solute carrier family 1, member 7 product : solute carrier family 1 (neutral amino acid transporter), member 5 protein_id : NP_033227.2

name	Fkrp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27734120 CCDS:CCDS20853.1 GeneID:243853 MGI:2447586
definition	GO_component : GO:0005794 - Golgi apparatus [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0009101 - glycoprotein biosynthesis [Evidence IDA]; GO:0016485 - protein processing [Evidence IDA] codon_start : 1 note : fukutin-related protein product : fukutin related protein protein_id : NP_775606.1

name	Strn4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:89886482 GeneID:97387 MGI:2142346
definition	GO_function : GO:0005516 - calmodulin binding [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : zinedin isoform 1 protein_id : NP_598550.2

name	Strn4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:89886486 GeneID:97387 MGI:2142346
definition	GO_function : GO:0005516 - calmodulin binding [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : zinedin isoform 2 protein_id : NP_001034967.1

name	Prkd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30725754 CCDS:CCDS20855.1 GeneID:101540 MGI:2141917
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0019992 - diacylglycerol binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 product : protein kinase D2 protein_id : NP_849231.1

name	Dact3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126090620 GeneID:629378 MGI:3654828
definition	codon_start : 1 note : dact 3 product : dapper homolog 3 protein_id : NP_001075124.1

name	Gng8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21327669 CCDS:CCDS20856.1 GeneID:14709 MGI:109163
definition	GO_component : GO:0005834 - heterotrimeric G-protein complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004871 - signal transducer activity [Evidence IEA]; GO:0005083 - small GTPase regulator activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : guanine nucleotide binding protein (G protein), gamma 8 subunit protein_id : NP_034450.1

name	Ptgir (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33468867 CCDS:CCDS20857.1 GeneID:19222 MGI:99535
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0004960 - thromboxane receptor activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation note : prostacyclin receptor product : prostaglandin I receptor (IP) protein_id : NP_032993.1

name	Calm3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680834 GeneID:12315 MGI:103249
definition	GO_function : GO:0005509 - calcium ion binding [Evidence TAS] GO_process : GO:0007049 - cell cycle [Evidence IDA] codon_start : 1 note : snoRNA MBI-163 product : calmodulin 3 protein_id : NP_031616.1

name	EG434128 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94379493 GeneID:434128 MGI:3645856
definition	codon_start : 1 product : hypothetical protein protein_id : XP_485870.4

name	0710005I19Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56119168 CCDS:CCDS20858.1 GeneID:71691 MGI:1918941
definition	codon_start : 1 product : hypothetical protein LOC71691 protein_id : NP_001007570.1

name	LOC100042835 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149256289 GeneID:100042835
definition	codon_start : 1 product : similar to Paraneoplastic antigen MA2 protein_id : XP_001478963.1

name	LOC434130 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149256531 GeneID:434130
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001480163.1

name	LOC434130 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149256529 GeneID:434130
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001480157.1

name	Ppp5c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859594 CCDS:CCDS20859.1 GeneID:19060 MGI:102666
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005829 - cytosol [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006470 - protein amino acid dephosphorylation [Evidence IEA] codon_start : 1 exception : mismatches in translation note : ANP receptor product : protein phosphatase 5, catalytic subunit protein_id : NP_035285.1

name	Hif3a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:8393528 CCDS:CCDS20860.1 GeneID:53417 MGI:1859778
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IPI]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IPI]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0001666 - response to hypoxia [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0006366 - transcription from RNA polymerase II promoter [Evidence IPI] codon_start : 1 exception : mismatches in translation note : hypoxia inducible factor three alpha; inhibitory PAS domain protein product : hypoxia inducible factor 3, alpha subunit protein_id : NP_058564.1

name	Psg16 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46810280 CCDS:CCDS20861.1 GeneID:26436 MGI:1347249
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] codon_start : 1 note : carcinoembryonic antigen 11 product : pregnancy specific glycoprotein 16 protein_id : NP_031702.2

name	Ceacam3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149256542 GeneID:384557 MGI:3646296
definition	codon_start : 1 product : similar to Carcinoembryonic antigen-related cell adhesion molecule 3 protein_id : XP_357710.5

name	Psg29 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:74959908 CCDS:CCDS20862.1 GeneID:114872 MGI:1891361
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] codon_start : 1 product : pregnancy-specific glycoprotein 29 protein_id : NP_473405.1

name	LOC100042868 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149256299 GeneID:100042868
definition	codon_start : 1 product : similar to pol protein protein_id : XP_001479005.1

name	Psg30 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625985 CCDS:CCDS20863.1 GeneID:73250 MGI:1920500
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] GO_process : GO:0007565 - pregnancy [Evidence IEA] codon_start : 1 product : pregnancy-specific glycoprotein 30 protein_id : NP_082756.1

name	Ceacam14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385448 CCDS:CCDS20864.1 GeneID:67084 MGI:1914334
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : CEA-related cell adhesion molecule 14 protein_id : NP_080233.1

name	EG381852 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702219 GeneID:381852 MGI:3647191
definition	codon_start : 1 exception : unclassified translation discrepancy product : hypothetical protein LOC381852 protein_id : NP_001030049.1

name	Ceacam11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112821667 CCDS:CCDS20865.1 GeneID:66996 MGI:1914246
definition	GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : Ceacam11-C1; Ceacam11-C3; Ceacam11-C4; carcinoembryonic antigen related protein product : CEA-related cell adhesion molecule 11 protein_id : NP_075778.2

name	LOC629352 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:629352
definition	number : 1 pseudo : _no_value

name	LOC629352 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:629352
definition	number : 2 pseudo : _no_value

name	LOC100042844 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042844
definition	number : 1 pseudo : _no_value

name	LOC670915 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149256509 GeneID:670915
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 15 Proteins product : similar to histone pseudo : _no_value transcript_id : XR_034511.1

name	LOC434127 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149256516 GeneID:434127
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1266 ESTs, 11 Proteins product : similar to ribosomal protein S3a pseudo : _no_value transcript_id : XR_034514.1

name	LOC640145 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149256539 GeneID:640145
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 398 ESTs, 5 Proteins product : similar to ribosomal protein L15 pseudo : _no_value transcript_id : XR_034552.1

name	LOC671132 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149256297 GeneID:671132
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 22 Proteins product : hypothetical LOC671132 pseudo : _no_value transcript_id : XR_033994.1

name	Psg-ps1 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:84872155 GeneID:232919 MGI:1347253
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pregnancy specific glycoprotein pseudogene 1 pseudo : _no_value transcript_id : NR_002857.1

name	LOC666767 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149256302 GeneID:666767
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 10 Proteins product : similar to 2410004N11Rik protein pseudo : _no_value transcript_id : XR_034001.1

clone name	MSMg01-311C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-446A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-385F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-277M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-522K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422D05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-062C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-329A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106A24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499L10
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-108K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515K13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-101N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543F12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-049G09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-118N06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-376E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-231C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-165E15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-505H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-096P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-198M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377L01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-273C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-509M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-277F15
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-345I19
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-510L11
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-137M21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-492F01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-168C11
singlet/doublet	singlet
plural/unique	plural

clone name	B6Ng01-024B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287H10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016P09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320I09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085A02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192B11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-294I20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-045L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-153M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054P03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136F01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320L16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182M13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313B15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-107I15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-056M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278H04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-008P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-143F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292A02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010N04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-098N16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115J16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298E24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-283L02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-313C06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-036I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152D21
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-476P06.T7 (MSMg01no476_p06.b1)	MSMg01-476P06.TJ (MSMg01no476_p06.g1)
ACC	AG558421	AG558422
length	827	811
length of high quality (start - end)	134 (67 - 200)	205 (78 - 282)
definition	CHROMAT_FILE: MSMg01no476_p06.b1 PHD_FILE: MSMg01no476_p06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:14 2005	CHROMAT_FILE: MSMg01no476_p06.g1 PHD_FILE: MSMg01no476_p06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:14 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGGATCCGCGG AATTCAATCCCTTACCCCACATAAAACCAATTCTACAAAGTTATTGTTCA ATCTCCACATGTGCACCCCTATACACAGATTGTAGATATATTAATTCACA CACGATAAACACGGGTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGCC TTTCCACCCCTCCCCCTTTTGTTTTTCCTTTTTCCCCTTTATATCCACCC TTTTTTTTTTTTCCCTCTTTTTCCTCCATTCTCTTTTGCTTTCCTCTCTT CCTTTCCTCCTCCTTTCCTTTATCTTTTCTACACACACCCCATTCCCCAC CCCTTCTTCTTCTTTTCCTTTCCCCATTTCACCTTTTTTTCTTCTCCCCC CCCCTCCCTCTTTCTTCTTTTCCTTTTTTTTCCCCTCTTTTTTTCCCCCC TTTTTCCCCTCCTTTATCCTTTTCATCTCTCCTTCTTCCTTCTCCTTTTC CTTCTTTTTTTTCCTCCCCTCCTCTCCCCCTTCCTTTTTTTTCCCCACCT TCTCTTTTTTCCTTCTTACTTTATAATTTTTTCCCTTTTTTTTTTTTTCT TCCTCCCCCCCTCCCTTTTTTCCTATTTCTAACAATTCTCCTCTCCTTTT CTTCCCCCCCCTACTTTATCTGACTCCTTTTTTCCTCCCACCCCCTCTTA CCCCACTTATACCCCCCTCTTCCCTTCTTCTTTCCTTCCTTCTCCTTCTT TTTTTCCCCTTTTTTTTTTTCCCCCCTTTCCCCTCTTTTTCCCCCCCCCC TTTCTTCTCTATCCCCTCCCTCACCCN	TCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCTAGCCAGGGCTATACGTG CTATTTTTTTTCTTTTTTAATTTACAGCAGGGCTGGAGGCATGGCTTTGC AATAGAGGGTGTGATGGTTTGTATATGCTTAGACCAAGGAGTGGCACTAT TAGGATGTGTGGCCTTGCTGGAGTAGGTGTGTCATTGTACTCCTCAGCCT AGCTGTCTGGAACTCAGCATTCTGCTAGCAGCCTTCAGATGAAAATATAG AACTCTCAGCTCCTCCTGCTTTACTATTTTCTGGATCCTGCCATGTTCCT GCCTTGAGGATTTTGGATTGAACCTCTGACCCTGTAATCCAGCCTCAATT AATTGTTATACAGACTTGTCTTGGTCATGCCGCCCGTTTATTTCCGTCCC CTCTTTTTTACTACCCCACTTCTACTTCTATATTTCCCCCTTCTTGCCTT TCCCCCTGCCCTCTCTCTTTTTCTTTTTCTCTCCCTCCCTCTTTTCTCCC TCCCTACCTCCGCTCCTTTTTTTCTTTCTCTCCTCCCTTTCTTTTCCTTC CTCTTCCTCCTTTCCTCCCCTCCCTTCACTCACTTTCTTCCCTTTCCCCC TTTTCCTCGCCTTCTTTTTTTTTTTTCCCCCCTTCTTTTCCTTTTTTTTT TCTTACTCTTTTCTTTTCCTTTCTCCTTTTTCTCCTTTATCTTTCCCTCC CTTATTTTCCCTTTTTCTCCCCCTTTTTTCTCCCTCCCTTTTTTATCTTC TCTCCCTCCTC
quality values	Open. Hide. 8 8 8 8 8 8 10 8 9 15 14 13 11 6 6 8 10 9 10 10 20 23 29 34 37 22 14 19 17 14 9 10 6 9 9 7 7 6 11 11 10 10 10 15 15 24 28 34 39 31 36 31 31 33 33 33 21 19 8 8 6 6 7 6 8 9 15 23 34 37 37 37 37 48 59 47 47 50 50 53 53 57 57 42 42 50 50 50 50 59 59 57 57 57 68 57 51 42 42 41 41 42 57 43 47 47 47 50 50 50 43 53 50 48 42 39 44 44 48 48 59 44 57 57 57 47 50 50 51 57 57 46 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 50 50 50 50 50 68 68 68 54 54 54 54 59 59 59 57 57 54 54 48 48 48 57 57 59 54 54 48 57 48 57 57 57 48 48 43 47 40 40 32 32 28 28 18 16 9 9 9 9 16 22 27 12 11 10 9 8 8 8 8 8 8 8 8 8 8 8 10 10 10 10 10 10 13 10 10 16 19 15 15 15 13 13 12 16 15 12 8 8 8 8 10 10 11 11 9 10 8 10 8 9 15 12 10 8 8 8 9 9 10 24 19 17 11 11 9 9 9 9 9 9 10 10 11 9 9 8 10 8 10 8 8 8 9 8 8 9 15 15 13 8 8 8 8 8 12 14 9 9 9 13 9 16 13 11 10 10 10 10 8 13 8 8 8 8 8 8 8 8 8 8 8 11 16 15 9 9 9 10 10 10 9 8 8 10 8 14 11 8 8 8 13 15 24 15 8 8 8 13 10 19 19 24 21 15 15 10 10 10 10 10 12 12 18 17 15 12 12 16 16 13 12 8 8 8 12 8 9 9 9 13 12 15 20 23 28 33 28 15 12 6 6 8 6 8 8 8 8 8 10 10 10 10 10 10 8 8 8 10 10 6 6 8 8 10 10 8 11 11 11 12 12 11 9 9 14 10 8 8 8 8 8 15 13 13 13 15 16 19 18 18 15 14 14 11 11 9 9 11 10 13 13 12 8 8 8 8 13 10 8 8 8 8 8 8 8 8 16 15 13 6 6 8 8 8 10 10 8 10 10 8 9 9 13 9 10 10 10 10 10 17 11 12 15 16 12 10 10 10 8 13 8 8 8 9 10 12 12 23 26 10 8 7 7 8 8 10 10 10 11 10 11 10 21 13 12 12 9 10 10 10 18 12 15 10 18 16 9 13 9 9 10 10 8 8 8 10 10 10 8 8 8 8 8 10 13 8 9 8 8 8 9 9 9 8 8 8 10 8 8 8 8 8 8 8 12 12 15 11 11 10 15 15 20 18 20 35 27 24 20 25 24 18 11 9 8 8 8 8 10 9 9 13 18 19 20 14 12 9 9 6 6 6 8 9 15 15 10 10 11 10 8 6 6 10 10 8 6 6 8 8 8 8 6 7 9 7 12 10 10 8 8 9 9 11 12 15 10 10 10 10 13 15 9 15 15 28 17 15 10 10 10 12 15 10 8 8 8 6 6 8 8 10 10 9 10 11 16 30 27 12 12 6 6 8 10 6 6 8 10 17 18 16 16 16 8 10 9 9 15 11 8 8 8 10 8 8 8 8 8 22 21 23 11 10 10 9 7 11 8 8 8 8 8 15 13 12 17 12 10 14 10 10 8 10 11 8 8 10 8 10 10 16 16 18 18 20 19 23 23 13 11 10 9 9 13 17 11 11 11 11 25 12 12 12 12 16 12 14 10 11 11 15 14 10 10 10 10 10 15 15 10 10 10 13 13 10 10 9 9 9 14 18 11 9 9 9 8 8 8 10 8 8 8 10 8 10 10 9 9 10 18 13 13 13 8 8 8 22 21 16 9 9 3 0	Open. Hide. 6 6 7 7 12 10 10 8 8 8 12 9 14 11 14 25 31 37 39 32 37 37 37 37 31 32 31 31 30 25 13 15 7 7 7 8 8 8 8 8 9 9 10 19 17 23 21 28 37 37 33 33 33 33 33 33 37 37 37 23 18 8 6 6 6 7 7 9 10 10 9 8 8 17 17 33 33 33 33 33 33 48 53 57 53 53 50 50 43 43 50 50 53 57 59 59 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 47 47 42 26 23 10 10 10 13 26 32 46 57 57 43 46 44 57 57 57 57 57 57 57 54 54 54 57 59 57 57 57 57 57 57 57 57 57 57 50 50 50 50 46 46 46 38 29 29 43 43 50 37 37 43 50 57 57 57 57 59 59 57 57 57 57 57 54 47 47 50 48 48 48 54 57 57 59 59 57 57 57 44 42 35 32 36 36 30 30 28 36 37 48 48 39 59 44 43 41 41 30 37 37 43 44 43 43 43 37 32 28 20 20 31 32 37 40 28 25 25 36 36 48 48 43 43 41 41 47 59 31 30 14 8 10 8 6 6 6 11 12 26 28 39 37 15 15 8 8 8 22 26 46 43 43 37 37 28 26 19 15 15 21 29 29 28 15 12 12 22 22 22 11 12 12 13 28 34 43 29 26 17 24 24 37 37 47 43 39 39 47 41 41 39 40 40 30 22 12 10 9 9 9 9 9 9 9 9 10 10 10 11 12 21 17 28 30 32 30 30 28 28 34 34 48 34 34 28 28 32 32 24 34 18 18 15 22 18 14 12 12 16 19 17 15 10 10 11 15 12 12 11 11 12 23 24 28 23 23 15 14 17 18 20 15 11 11 11 11 13 13 10 10 9 9 9 9 9 13 12 15 12 16 16 12 9 9 9 10 10 12 10 15 13 8 10 10 10 10 10 10 10 10 10 10 11 11 17 8 8 8 8 8 9 10 13 13 10 17 8 8 8 8 10 8 6 8 8 8 8 13 9 10 13 10 10 10 9 8 8 6 6 8 10 8 8 8 10 10 10 10 8 8 8 11 11 8 8 8 8 8 8 8 8 15 17 22 22 20 16 12 9 9 9 13 9 8 8 8 8 10 11 19 16 14 13 9 10 10 10 13 10 12 12 13 13 9 9 9 9 13 10 11 15 13 12 11 10 8 10 8 8 8 8 8 13 8 8 8 11 8 8 8 9 9 9 9 12 14 20 24 21 19 15 10 10 10 10 15 12 8 6 6 6 10 11 15 14 17 17 16 12 8 8 6 6 8 8 8 10 10 12 10 10 9 9 8 8 8 8 8 8 10 13 11 14 9 9 9 10 10 15 16 18 17 18 18 11 11 11 12 15 12 12 14 12 15 15 19 12 12 12 12 12 10 17 17 13 11 10 10 9 10 10 13 11 8 8 8 8 12 16 16 9 8 10 8 8 11 22 30 23 21 10 8 8 15 13 6 6 6 15 8 8 8 8 18 23 15 15 21 22 18 13 13 18 22 17 19 10 12 11 12 10 9 9 13 19 22 8 8 8 8 10 10 10 10 13 30 17 16 9 7 10 8 9 9 11 11 12 11 11 11 13 13 17 12 10 10 10 11 12 10 10 9 9 12 12 15 18 18 19 24 11 15 10 13 13 8 6 6 8 8 8 10 10 10 9 9 10 13 10 13 10 10 9 15 17 19 14 14 15 23 22 21 21 10 10 10 11 10 8 8 6 6 8 8 10 11 12 15 16 10 8 8 8 8 11 8 10 10 10 13 17 7 7 7 8 8 18 10 10 8 8 8 6 6 6 6 6 10 7

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no476_p06.b1 MSMg01no476_p06.b1 CHROMAT_FILE:
MSMg01no476_p06.b1 PHD_FILE: MSMg01no476_p06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:14 2005
         (134 letters)



>mm_chr7_17578283_17578816
          Length = 534

 Score =  246 bits (127), Expect = 5e-70
 Identities = 130/131 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccacataaaaccaattctacaaagttattgttcaatctccacatgtgcacccctatacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ccacataaaaccaattctacaaagttattgttcaatctccacatgtgcacccctatacac 241

                                                                       
Query: 61  agattgtagatatattaattcacacacgataaacacgggttttgtttgtttgtttgtttg 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 agattgtacatatattaattcacacacgataaacacgggttttgtttgtttgtttgtttg 181

                      
Query: 121 tttgtttgttt 131
           |||||||||||
Sbjct: 180 tttgtttgttt 170


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 534
Length adjustment: 8
Effective length of query: 126
Effective length of database: 526
Effective search space:    66276
Effective search space used:    66276
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information