BAC Information

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BAC

Clone NameMSMg01-477G03
Chromosome7 (Build37)
Map Location 70,958,352 - 70,958,559
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622251, Chrna7, Otud7a, LOC545971, LOC100041386, LOC665083
Downstream geneKlf13, E030018B13Rik, Trpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee, Apba2, 5730507A09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477G03.T7 (MSMg01no477_g03.b1)MSMg01-477G03.TJ (MSMg01no477_g03.g1)
ACCAG558747AG558748
length739740
length of high quality
(start - end)
655 (48 - 702)190 (129 - 318)
definitionCHROMAT_FILE: MSMg01no477_g03.b1 PHD_FILE: MSMg01no477_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:48 2005CHROMAT_FILE: MSMg01no477_g03.g1 PHD_FILE: MSMg01no477_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGAGTCAATAGXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCC
GCGGAATTCTATTATTTGATATTTGTTAAATGTTTTCTAAATGTATATTT
ATGAGAGTTATGAATCTGCAATGCATACATAATCTATCTGGCTCAGGAAG
GAAGGTGATATTGTCTTTCTAGAAATGTGATAATCTTCCCTTCTGCTTTC
TTTTCTGGAAGAGGTTGTATAAAACTGTTGCTAATTCTTGTCTAGATGTT
TCATAGAATTCACCAGTGAAGTCATGTAAGCCAACACATTTCTTTAAGGA
CTTTTTACATTCTAAATTTGATTTCTTATAGTTTTAGGACTACATAAATT
ATCTGTCTCACATTAAATGGATTGAGAATGTAGGGCTCTCCAAGAAATTA
TTCTGTTTCCACTAAATTATTAAACATATGTATAGGCTGTCCATTAACTT
GTTACTTCCTTATTGTCTTTCTGATATCTGCAGGGTGTGGTGATAACCCT
CTTTTATTACTGGTATCTGTAATGTGTAGTCTTTTGTTAGCTTAGTAATT
CTTTTGAGTCAGGGTCTTTCTGGATCACCTGGAACTCACCTATATAGATC
AGGCCAGCCTTTAACCTTCAGTGATCCTCCTGCCTCAGCTTCATGAGTGC
TGGGATTACTAGCACGTGCCACCATACCAAGTTCACCAAGCCTATCTTAA
ATAATTTTAGTCGTCAAGATAACTTATTTAGAGTGTAGG
AAGCACCGATTATAGTGGGAGGCCTGGNGGNNCGCCTTTCAAAACCGGTA
GGTGACACTATAGATTTCCACAAGAAGGTCAGCTATCCCAGGTCTGGGCA
AGCTCAAATACCATTGCCAATTCTTCCCATCACTCAGGCAAGCACTGGGT
CTAAGGGTGTAGAGTGTACAATGTCCAGAGGCCTTACCTCCCTTGGGTTA
CCTCTTGGTGTGTGAGGCAGCATCCCTGCCTCCAAGGGTCTGAATGATTG
TCTCTTGTACACTTAACATGGATGGAGCAGCAGTCTTGGACCAGTTTCCA
GGTTTGCTCTAGCTTCAGATTAATCATTTTGGCTACTGTGTGACTTGGCT
TCACACAATCATTGCTGGGAGCAGTCATCTGCAAAGAGACAAGGTGGTGG
CTGTCAGGTGGCTGTGTCCCAATGTGCAGTGGGGGCAGCTTGCTGCCTTT
TCTCTAGCTTTGTTCCGTATGATGGTCTGCTTTGGTGTTTCTTCTGTAAC
GTCTGTAGCTTCCCACTGCGCATGGGGTGCTGCTGGGCTAGCTTTAGCGG
CATCAGTGGGGGCAGGCACACACAGGGGTGAACTCAGAAAACAGCTGGCA
GGAGGTAATTCTTGCTTCCCACACCAACCATCCTTCATATTGGGCTCTTC
CCTGACTATTGTTTGTAGGGTTTAGTTTAACGAAACCGCCTGGATGGTTT
GTTGTATTTTGAATTTGAAATACACACTGCACCCTCGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_g03.g1 MSMg01no477_g03.g1 CHROMAT_FILE:
MSMg01no477_g03.g1 PHD_FILE: MSMg01no477_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:48 2005
         (190 letters)



>mm_chr7_70958253_70958842
          Length = 590

 Score =  290 bits (150), Expect = 3e-83
 Identities = 185/208 (88%), Gaps = 18/208 (8%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcactcaggcaagcactgggtctaagggtgtagagtgtacaatgtccagaggccttacc 60
           |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| 
Sbjct: 307 atcactcaggcaagcactgggtctaaggatgtagagtgcacaatgtccagaggccttact 248

                                                                       
Query: 61  tcccttgggttacctcttggtgtgtgagg------------------cagcatccctgcc 102
           |||||||||||||||||||||||||||||                  |||||||||||||
Sbjct: 247 tcccttgggttacctcttggtgtgtgaggcagcatccctgcctccaacagcatccctgcc 188

                                                                       
Query: 103 tccaagggtctgaatgattgtctcttgtacacttaacatggatggagcagcagtcttgga 162
           |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 187 tccaagggtctgaatgattgtctcctggacacttaacatggatggagcagcagtcttgga 128

                                       
Query: 163 ccagtttccaggtttgctctagcttcag 190
           ||||||||||||||||||||||||||||
Sbjct: 127 ccagtttccaggtttgctctagcttcag 100


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)