BAC Information

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BAC

Clone NameMSMg01-477J21
Chromosome7 (Build37)
Map Location 136,137,571 - 136,138,192
singlet/doubletsinglet
Overlap genenone
Upstream geneTrim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip
Downstream geneLOC210714, LOC100043144, Ppapdc1a, Brwd2, LOC100043150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477J21.T7 (MSMg01no477_j21.b1)MSMg01-477J21.TJ (MSMg01no477_j21.g1)
ACCAG558926AG558927
length742761
length of high quality
(start - end)
694 (49 - 742)618 (75 - 692)
definitionCHROMAT_FILE: MSMg01no477_j21.b1 PHD_FILE: MSMg01no477_j21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:06 2005CHROMAT_FILE: MSMg01no477_j21.g1 PHD_FILE: MSMg01no477_j21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACGATCCGCGGAAT
TCTTTGTATATATTGCATATTAACCCTCTATCGGATGTAGGATTGGTAAA
TATCTTCTCCCAATCTGTTGGTTGCCATTTTGTCCTATTGACAGTGTCCT
TTGCCTTATAGAAGCTTTGCAATTTTATGAGTCTCATTTGTCTATTGTTG
ATATTAGAACACAAGCCATTGTTGTTCTGTTCCGGAAATTTCTCCTGTGC
CCATATGCTCAAGGCTCTTTCCCACTTTCTTTTCTATTAGTTTCAGTGTA
TCTGGTTTTATATGGATGGAGGTCCTTGATCCACTTGGACTTGGGCTTTT
TACAAGGAGATAAGAATGGATCAATTTTTGCATTCTTCTACATGCTGACC
ACCAGTTGAACCAGCATCAATTGTTGAAAATACTGTCTTTTTTTTCCACT
AGATGGTTTTAGTTCCTTTGTCAAAGATCAAGTGACCATAGGTGTGTGGG
TTCATTTCTGGCTCTTCAATTTTATTCTATTGATTTTCCTGCCTGTCTCT
GTATCAATGCCATACAGTTTTTATCACTATTGCTCTGTAATCCAGCTTGA
AGTCAGGGATGGTGATTCCCCAAGAAGTTCTTTTATTGTAGAGAATAGTT
TTTACTATCCTGGAACTTTTGTTATTCCAAATGAATTTGCAAATTTCTCT
TTCTAACTCTATGAAGAATTGAGTTGGAATTTTGGTGGGGAT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTAGGGAATAAGGCAGATGTGTCGCT
AGAGATGTGTTATTAGGGAATAAGGCAGATGTTGCTTAATAAAGAAACCA
GGCAGAAAGCAAACATGGAAGGCCATCCTGACTATGATAGAGACATGGAG
ATGAGAGAGGAAGACAAGAATGTCAGAACAAACTCTGACAGGAGATGGCA
TTTAGGTAGAGGAAGCAGGGAGAAGCTGGCAAAGAATAGAAGGGAAACGT
GAAGTGCCAGGTTGTGTGTGTGTGTGTGTGTGTGTGTAGATTTGTGTAGA
GGTCAGAGGGTAGTCTTGGGTGTCATTCCTCAGAAGCCATCCTTGAGACA
GGATCTTTCAGCAGCCTAGAGCTTGCCGAGTAAACTAGGCCAGCTGATGA
GTAAGCCCCAGGGGTCTGCCCGTCTCTGCCTCCCAAGCACTGGGATTACA
AGGGTGCCATCCCTTTTCTTTTGACATGGGCTCTGGGGTTTGAAGTGCTT
GATGTGATTTCTCAATTGTCCAACAGTGTGGCATGTTTGCTAAATATAAA
GTCAGAGCTGCAGGTTGGTCCGTGTGGAGCATCATGTTGGCTAGGGCTCT
GAAAATGCAGCCATGTTTTTTTACTAACTGCATCCCTTTACCCTTCAGAA
AGAATCTAAGCTTCATGTANGAAACAAAATCTTTAATAATCCCATTTTCT
CCTCTCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_j21.g1 MSMg01no477_j21.g1 CHROMAT_FILE:
MSMg01no477_j21.g1 PHD_FILE: MSMg01no477_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:06 2005
         (618 letters)



>mm_chr7_136137375_136138392
          Length = 1018

 Score = 1116 bits (577), Expect = 0.0
 Identities = 610/623 (97%), Gaps = 6/623 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagggaataaggcagatgtgtcgctagagatgtgttattagggaataaggcagatgttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ttagggaataaggcagatgtgtcgctagagatgtgttattagggaataaggcagatgttg 256

                                                                       
Query: 61  cttaataaagaaaccaggcagaaagcaaacatggaaggccatcctgactatgatagagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cttaataaagaaaccaggcagaaagcaaacatggaaggccatcctgactatgatagagac 316

                                                                       
Query: 121 atggagatgagagaggaagacaagaatgtcagaacaaactctgacaggagatggcattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 atggagatgagagaggaagacaagaatgtcagaacaaactctgacaggagatggcattta 376

                                                                       
Query: 181 ggtagaggaagcagggagaagctggcaaagaatagaagggaaacgtgaagtgccaggttg 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 377 ggtagaggaagcagggagaagctggcaaagaataggagggaaacgtgaagtgccaggttg 436

                                                                       
Query: 241 tgtgtgtgtgtgtgtgtgtgtgt----agatttgtgtagaggtcagagggtagtcttggg 296
           |||||||||||||||||||||||    ||||||||||||||||||||||| | |||||||
Sbjct: 437 tgtgtgtgtgtgtgtgtgtgtgtgtgtagatttgtgtagaggtcagagggcaatcttggg 496

                                                                       
Query: 297 tgtcattcctcagaagccatccttgagacaggatctttcagcagcctagagcttgccgag 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 497 tgtcattcctcagaagccatccttgagacaggatctttcagcagcctagagcttgtcaag 556

                                                                       
Query: 357 taaactaggccagctgatgagtaagccccaggggtctgcccgtctctgcctcccaagcac 416
           ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 taaactaggccggctgacgagtaagccccaggggtctgcccgtctctgcctcccaagcac 616

                                                                       
Query: 417 tgggattacaagggtgccatcccttttcttttgacatgggctctggggtttgaagtgctt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgggattacaagggtgccatcccttttcttttgacatgggctctggggtttgaagtgctt 676

                                                                       
Query: 477 gatgtgatttctcaattgtccaacagtgtggcatgtttgctaaatataaagtcagagctg 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gatgtgatttctcaattgtccaacagtgtggcatgtttgctaaatataaagtcagagctg 736

                                                                       
Query: 537 caggttggtccgtgtggagcatcatgttggct-agggctctgaaaatgcagccatgtttt 595
           |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 737 caggttggtccgtgtggagcatcatgttgg-tcagggctctgaaaatgcagccatgtttt 795

                                  
Query: 596 tttactaactgcatccctttacc 618
           |||||||||||||||||||||||
Sbjct: 796 tttactaactgcatccctttacc 818


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)