BAC Information

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BAC

Clone NameMSMg01-477K23
Chromosome7 (Build37)
Map Location 122,643,423 - 122,829,077
singlet/doubletdoublet
Overlap geneSox6
Upstream genePde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967, LOC668472
Downstream geneLOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477K23.T7 (MSMg01no477_k23.b1)MSMg01-477K23.TJ (MSMg01no477_k23.g1)
ACCAG558978AG558979
length730774
length of high quality
(start - end)
678 (53 - 730)620 (76 - 695)
definitionCHROMAT_FILE: MSMg01no477_k23.b1 PHD_FILE: MSMg01no477_k23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:11 2005CHROMAT_FILE: MSMg01no477_k23.g1 PHD_FILE: MSMg01no477_k23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,643,423 - 122,644,097)(122,828,749 - 122,829,077)
sequence
NTTTTTACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGA
TCCGCGGAATTCTGGGAGGTTCTCGGACTATCAGGAAAGAGGAGTTATAA
ATCACATTCAATTTATTCACCGTGCTCATCTCACCAAATCCAAATGGCTG
TCTTAGAGATTCAGCTCACTATTGTTGGTGGTTTTAGCTTTGTCCAATCA
GGAGAGCCCTTTGGTAGCTTCTGTTCCTGCTTATGGTCAGAATGTTAACT
TACTTTCATTACAAGAATGCTGATTAAAGTTAAATTTTGATTTCTTCTTG
TTTAAAACAAAGAAAGAAAGTAAAAGGGGGGAAAGGAGCTGGCTGTCCTC
ATGATTAACTTAGTAGAAAACCCATTCTGTGCCCGAGAAAGCCTCCATCA
TCAGCGAAGCAACATGCTCCTCATGTCTGAGACATAGACGGCCAGGCCAG
CAGGGCATGGCTTATCCCTGCCTCCTTTATAAACCATCAGCTAGATGTGT
TCGTCTGTTTACTTTGGCAGTGTTGGAAACCGACCCGCCTTGCACAGACT
AGGCAACGTGCTTCACTGCTGAGCTCAAGGGCAGGCCCTAGCTGGGCAGA
TGAGCAACACTGGGGAACTGACTTGAGGAAGGCACATGTGGTGGATATAT
GACTGGCTCTTCTGAGCTAAAGATTGGTAAATAACTAAGAACCAACAGTG
CAAAAGAGAAGGATGGGGTGCCTGTGTCAT
CCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGTCACCCATTCTTCTGTTTTTCA
AGAAGGACTGTGTTTGTAGAGTTTCAGTGAACCCACAAATCCTCATACAG
TGCTTATTTTGGGGTTTATATGATTTCATATTTCCTACCACTCAGGCAGG
ATTGTTTATTTTATGGGTATGATAGCTTTGGCCGCATGTATGTCTGTGCA
ACGCATGTGTGTAGTGCCTAAGGAGGCCAGAAGAGGGTATTGGATCCCTT
ACAACTTACAAGTTACAGATGGTTGTTAGCTGTCAAGTGGGAGCTGGAAA
TCAAATCGGGGCTTCTGCAAATGCAGCAAGTACTCTTAAACACTGAGCCA
CCGTTCCTGCCCCAAGAAGGCTTCCCTTTAAAGACTTAGAGCAAAGAGCA
GAGAATCTGACAATAACAAGAGATAAGACATTAATTACATACTGTGTCAC
AGTGCATTGTGTGTTTTAATCTCACACAATCCTCAAGCCAGGGCTGTGAG
GTGGGTATCATCACTTTTCTTTTACTGAAGAGAAAGAAGGGTTCGGGAAG
AAAGGACAGTTTTCTTCAGACACCAAGAAAATGCCAGCCATTTCAAGGTT
TGAATCAAGGTCTATTTGCTGCTAAGCTGCCATCCTTTCTGCCTGAGTTG
CCTTTCTACAGATTGGCCCCTGCTGGGCCACCCAGACACTACTGGGTCAT
ACTTTGTCATGTGNATCTTAGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_k23.b1 MSMg01no477_k23.b1 CHROMAT_FILE:
MSMg01no477_k23.b1 PHD_FILE: MSMg01no477_k23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:11 2005
         (678 letters)



>mm_chr7_122643220_122644297
          Length = 1078

 Score = 1253 bits (648), Expect = 0.0
 Identities = 669/676 (98%), Gaps = 2/676 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgggaggttc-tcggactatcaggaaagaggagttataaatcacattcaattt 62
           ||||||||||||||  | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgggagggacat-ggactatcaggaaagaggagttataaatcacattcaattt 262

                                                                       
Query: 63  attcaccgtgctcatctcaccaaatccaaatggctgtcttagagattcagctcactattg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 attcaccgtgctcatctcaccaaatccaaatggctgtcttagagattcagctcactattg 322

                                                                       
Query: 123 ttggtggttttagctttgtccaatcaggagagccctttggtagcttctgttcctgcttat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttggtggttttagctttgtccaatcaggagagccctttggtagcttctgttcctgcttat 382

                                                                       
Query: 183 ggtcagaatgttaacttactttcattacaagaatgctgattaaagttaaattttgatttc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggtcagaatgttaacttactttcattacaagaatgctgattaaagttaaattttgatttc 442

                                                                       
Query: 243 ttcttgtttaaaacaaagaaagaaagtaaaaggggggaaaggagctggctgtcctcatga 302
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 443 ttcttgtttaaaacaaagaaagaaagtaaaagggggggaaggagctggctgtcctcatga 502

                                                                       
Query: 303 ttaacttagtagaaaacccattctgtgcccgagaaagcctccatcatcagcgaagcaaca 362
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 503 ttaacttagtagaaaacccattctgtgccggagaaagcctccatcatcagcgaagcaaca 562

                                                                       
Query: 363 tgctcctcatgtctgagacatagacggccaggccagcagggcatggcttatccctgcctc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgctcctcatgtctgagacatagacggccaggccagcagggcatggcttatccctgcctc 622

                                                                       
Query: 423 ctttataaaccatcagctagatgtgttcgtctgtttactttggcagtgttggaaaccgac 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctttataaaccatcagctagatgtgttcgtctgtttactttggcagtgttggaaaccgac 682

                                                                       
Query: 483 ccgccttgcacagactaggcaacgtgcttcactgctgagctcaagggcaggccctagctg 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ccgccttgcacagactaggcaacgtgcttcactgctgagctcaagggcaggccctagctg 742

                                                                       
Query: 543 ggcagatgagcaacactggggaactgacttgaggaaggcacatgtggtggatatatgact 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ggcagatgagcaacactggggaactgacttgaggaaggcacatgtggtggatatatgact 802

                                                                       
Query: 603 ggctcttctgagctaaagattggtaaataactaagaaccaacagtgcaaaagagaaggat 662
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 803 ggctcttctgagctaaagattggtaaataactaagaaccaacagtgcaaatgagaaggat 862

                           
Query: 663 ggggtgcctgtgtcat 678
           ||||||||||||||||
Sbjct: 863 ggggtgcctgtgtcat 878


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no477_k23.g1 MSMg01no477_k23.g1 CHROMAT_FILE:
MSMg01no477_k23.g1 PHD_FILE: MSMg01no477_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:12 2005
         (620 letters)



>mm_chr7_122828749_122829768
          Length = 1020

 Score =  629 bits (325), Expect = 0.0
 Identities = 328/329 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtcacccattcttctgtttttcaagaaggactgtgtttgtagagtttcagtgaaccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctgtcacccattcttctgtttttcaagaaggactgtgtttgtagagtttcagtgaaccca 270

                                                                       
Query: 61  caaatcctcatacagtgcttattttggggtttatatgatttcatatttcctaccactcag 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 caaatccccatacagtgcttattttggggtttatatgatttcatatttcctaccactcag 210

                                                                       
Query: 121 gcaggattgtttattttatgggtatgatagctttggccgcatgtatgtctgtgcaacgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gcaggattgtttattttatgggtatgatagctttggccgcatgtatgtctgtgcaacgca 150

                                                                       
Query: 181 tgtgtgtagtgcctaaggaggccagaagagggtattggatcccttacaacttacaagtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 tgtgtgtagtgcctaaggaggccagaagagggtattggatcccttacaacttacaagtta 90

                                                                       
Query: 241 cagatggttgttagctgtcaagtgggagctggaaatcaaatcggggcttctgcaaatgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  cagatggttgttagctgtcaagtgggagctggaaatcaaatcggggcttctgcaaatgca 30

                                        
Query: 301 gcaagtactcttaaacactgagccaccgt 329
           |||||||||||||||||||||||||||||
Sbjct: 29  gcaagtactcttaaacactgagccaccgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)