BAC Information

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BAC

Clone NameMSMg01-477M15
Chromosome7 (Build37)
Map Location 6,983,803 - 6,984,270
singlet/doubletsinglet
Overlap genenone
Upstream geneNlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc
Downstream geneLOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170, LOC100042662
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477M15.T7 (MSMg01no477_m15.b1)MSMg01-477M15.TJ (MSMg01no477_m15.g1)
ACCAG559058AG559059
length743777
length of high quality
(start - end)
505 (76 - 580)575 (77 - 651)
definitionCHROMAT_FILE: MSMg01no477_m15.b1 PHD_FILE: MSMg01no477_m15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:20 2005CHROMAT_FILE: MSMg01no477_m15.g1 PHD_FILE: MSMg01no477_m15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCAAGAGGAGCC
GCGGAATTCATGCCCTTTCCGGTAATTAGGAGGGCTCTCGAGTCTAGAAA
CCCATCCTTTGCTGCTCTCTGTTCAACAGCCCACATCCTTGTGAGCAGAT
TCTTCCAAAGACAAGCCTTCAGAGGACACCGGAGGTCTGCCTGACAGTTT
GACTGAAATACTCTCAGTATTTGTGAGCCAAGCAGTGCCCACAATCCTGA
GGCACTAAATGGCGAGATAATAACTTCTTAGCGTATTAAGCTATTAAATT
TGTAGTCAGTCAAATAGCCAAGAGACAGACACTTACTAAGTGTGGCAACA
AGCATGAAGTTCCCCGGCATCACACAGATGGACAGGAGCCTCCAGTGATT
GTCAAGGAGCTCTCGTGGCTCCCAGGAGAATATGGAGAACACATCCTTGA
AGGTCATGCAGGCCTAGCATGATGGGAACAGTTAACTGCGCCAGAAGCAT
CCTCCATGTACACCACCCTTCAGTCTGTCTCACATATATATATGCCTTAA
CTGCTCTCCTCCCCAAGCCATAAAACCACTAATGGCTACTCTTTGTCCAC
ATCTTGCTCCAGTGTGCAGAACACAAAATAAGCAGGTACTGTGCAAAAAG
ATATCATACATGCTTAGTGTCATAGGTCCACAAGATGGCTCGGTGAGGAA
AGAGTCTTGTCTTGCCTGCTAAGCCTGGTGGCCTGAGTTTTGG
CCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATACACACAATTTATTTTGGTCA
AATCCATCCCCTAACCTCCTGTTTTACTTAGCATTACTATTGCTGTAATG
AAACATCATGATCAAAAGCAACTTGAGAAGGAAATCATTTATTCAGCTTA
TATATATTCCAAACCACAGATTGTCCACTGAAGGAAGCCAAGGCAAGAGC
TCATACAGGGCAGGAACATGGAGGCAGGAGCTGATGTGGAGGCCATAGAG
TGGTGCTGCTTACTGGATTGCTCTTTCTGCTTTCTTTCAGAACCTCGGAC
CACCAGCCCATGGCTGTCCTACCCACAACTCGTTGGGCCTCCCCCATCAA
TCACTAATTTAAAACAAACAAAAACAAACAAGTAAAAACACAAAAAACAA
AAAACCCCACCCTATTGATTTGCCTGCCTACAGCCCAATCTTACAGAGGC
ATTTTCTTAATTGAGGTTCTTTCCTCTCAAATGACTTTAGCTTGTGTCAA
TTGACATAAAACTAACCAGAACATCTCCCTGCTTCAATTCTCCCCTACAT
CCCACATCCTCAAGTTTATATTCTTTTTTTTTTTGAAAGATAAGCCTCTG
AGTCCAATTAGTGTGGCTGATATATGGGTAGGAGGCATGCCCTGGAGCAC
AGTCAACCTTCCATGGACCAACCCCCTAAAAAGAACCCTAACTCTTCCTT
TTCTACCAGNCGTCTACTCTCAGTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_m15.b1 MSMg01no477_m15.b1 CHROMAT_FILE:
MSMg01no477_m15.b1 PHD_FILE: MSMg01no477_m15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:20 2005
         (505 letters)



>mm_chr7_6983368_6984272
          Length = 905

 Score =  866 bits (448), Expect = 0.0
 Identities = 463/468 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaggagggctctcgagtctagaaacccatcctttgctgctctctgttcaacagcccaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 ttaggagggctctcgagtctagaaacccatcctttgctgctctctgttcaacagcccaca 844

                                                                       
Query: 61  tccttgtgagcagattcttccaaagacaagccttcagaggacaccggaggtctgcctgac 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 843 tccttgtgagcagattcttccaaagacaagccttcagagggcaccggaggtctgcctgac 784

                                                                       
Query: 121 agtttgactgaaatactctcagtatttgtgagccaagcagtgcccacaatcctgaggcac 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 agtttgactgaaatactatcagtatttgtgagccaagcagtgcccacaatcctgaggcac 724

                                                                       
Query: 181 taaatggcgagataataacttcttagcgtattaagctattaaatttgtagtcagtcaaat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 723 taaatggcgagataataacttcttagcgtattaagctattaaatttgtagtcagccaaat 664

                                                                       
Query: 241 agccaagagacagacacttactaagtgtggcaacaagcatgaagttccccggcatcacac 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 agcaaagagacagacacttactaagtgtggcaacaagcatgaagttccccggcatcacac 604

                                                                       
Query: 301 agatggacaggagcctccagtgattgtcaaggagctctcgtggctcccaggagaatatgg 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 agatgtacaggagcctccagtgattgtcaaggagctctcgtggctcccaggagaatatgg 544

                                                                       
Query: 361 agaacacatccttgaaggtcatgcaggcctagcatgatgggaacagttaactgcgccaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 agaacacatccttgaaggtcatgcaggcctagcatgatgggaacagttaactgcgccaga 484

                                                           
Query: 421 agcatcctccatgtacaccacccttcagtctgtctcacatatatatat 468
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 agcatcctccatgtacaccacccttcagtctgtctcacatatatatat 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)