BAC Information

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BAC

Clone NameMSMg01-478C15
Chromosome7 (Build37)
Map Location 113,381,188 - 113,381,585
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn, Trim3, Arfip2, Fxc1, Dnhd1, LOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660
Downstream geneLOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966, LOC100042141, Olfr693, Olfr694, Olfr695, Olfr696-ps1, Olfr697, Olfr698, Olfr699, Olfr700, Olfr701, Olfr702, Olfr703, Olfr704, Olfr705, Olfr706, Olfr707, Olfr708, Olfr709-ps1, Olfr710, LOC384651, Olfr6, Olfr711, GA_x5J8B7W6B6J-1784824-1783474, Olfr2, Olfr713, Olfr714, Olfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478C15.T7 (MSMg01no478_c15.b1)MSMg01-478C15.TJ (MSMg01no478_c15.g1)
ACCAG559344AG559345
length721729
length of high quality
(start - end)		405 (317 - 721)661 (69 - 729)
definitionCHROMAT_FILE: MSMg01no478_c15.b1 PHD_FILE: MSMg01no478_c15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:49 2005CHROMAT_FILE: MSMg01no478_c15.g1 PHD_FILE: MSMg01no478_c15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:49 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGAGGCGCGGAATTCATT
TCTTACAGAAAGGTAGAGGCAAAAAGGTTTATACATTCAAATCAAATGCC
TTTAGCCACAAACCTCATAGGAATGTATTTTTTTTCTCCAAATTATTAAG
GTTTCATGGAGTATTTCAAGCTCTTATGTATTGGAATTTCTTAAATTTCT
TCCAATCTACTCATATTCTAAAATGGAGAACATTTAAGTAACTTATGAAC
CATAGTTCATTCCCACTTCTAATTACTCAGATAGAAGCTCATTTCCCATT
CTGGCTGCCTTTTGTTAAAATGTCTCCAGCCTCCCCCAAATCCATTTTCC
TAACACCAGTTCTTGTGGTTGTCTTTTGGGAATATGTCATTCTGTCAACC
TCAGCTCTGGGCTTCTCAACTATCTGTAGACTTCTTCTATTTACTACCCT
ACACTCTGATTTATTCACATCCTAAATGCTCCTCATCCCAGTCTCCCATT
TTTCTCTGAGAGGACAGCACTCTTTCCCTAACCTCCCCATCCTTCGGTGC
ACCAAGACTCTAGAGAATTAGGCATATCCTCTTCCATGAGACTAGACAAG
GCAGCCCTTTGCTACATATGAGTTTGGGTCTCAGACCAGCCTATCTATCT
ATCTATCAATCAATCAATCTATCTATCTATCTATCTATCTATCTATCTAT
CTATCTATCTATCTATCTATN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTTAAATCCCTCAGGAATTAGATACTGAATC
TGGCACAGAGAAATAAGGGACCTGCTATTGATTAGTATTGGAGAATAATG
GATAGCAGCAGTTGGGAGGAGGAGCCTGAGCATGAATTGATGGTAGGAGA
GAGGTAGGAGAGTCCCTAGGAGGGGATGAGTCAGGAAGACAACATAGCAG
GAAGTATTCAAGGGAAGTTTTATGATGGAAAAATAATAAAGTCATGAAAT
TTTCTAAAATGTCATGGGGACATGGAGCAGGGTGCAACAACCAGGAATAA
CCAGGAAGAAATGGGAAATATCTGTGCAGTAACAGGTCAGTCTTTTTAGG
TTTGGTAGGAATTCCATCCAGTCCCATAATAAAGTGAGTGAAAATACATT
TCAATAAAAGAAAAAAATTTAAAAACATTTCTGACTTAAATCAACATTAT
TTCTGCTTGTTACATTCATTCATTCTAGAGCAAACAACAAAAATTCATGT
TTATTTATCAGTGAATTGTGTTTATGTGATGTAAATCATATTTATTTATA
TATGTATCATATTTATGCATATGTCATATATTACATGTTTTCTGACATGT
GGAAACAGAAAAGAAAATCTGAAACAAAATCATAAGAAGAGGTGAAGTGA
GAGTAGAAAAATGGGGAGATGGTAAATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_c15.b1 MSMg01no478_c15.b1 CHROMAT_FILE:
MSMg01no478_c15.b1 PHD_FILE: MSMg01no478_c15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:49 2005
         (405 letters)



>mm_chr7_113380988_113381792
          Length = 805

 Score =  623 bits (322), Expect = 0.0
 Identities = 379/398 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatgtctccagcctcccccaaatccattttcctaacaccagttcttgtggttgtcttt 60
           |||||||||||||| |||||||||||||| |||| ||||||||||||||| ||| |||||
Sbjct: 201 aaaatgtctccagcttcccccaaatccatcttccaaacaccagttcttgtagttttcttt 260

                                                                       
Query: 61  tgggaatatgtcattctgtcaacctcagctctgggcttctcaactatctgtagacttctt 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 tgggaatatgtcattctgtcaacctcagctctggtcttctcaactatctgtagacttctt 320

                                                                       
Query: 121 ctatttactaccctacactctgatttattcacatcctaaatgctcctcatcccagtctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatttactaccctacactctgatttattcacatcctaaatgctcctcatcccagtctcc 380

                                                                       
Query: 181 catttttctctgagaggacagcactctttccctaacctccccatccttcggtgcaccaag 240
           ||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 catttgtctctgagagggcagcaccctttccctaacctccccatccttcggtgcaccaag 440

                                                                       
Query: 241 actctagagaattaggcatatcctcttccatgagactagacaaggcagccctttgctaca 300
           ||||||||| |||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct: 441 actctagaggattaggcatatcctcttccatgaggctagacaaagcagccctctgctaca 500

                                                                       
Query: 301 tatgagtttgggtctcagaccagcctatctatctatctatcaatcaatcaatctatctat 360
           |||||||||||||||| |||||||||||||||||||||||| ||| ||| ||||||||||
Sbjct: 501 tatgagtttgggtctcggaccagcctatctatctatctatctatctatctatctatctat 560

                                                 
Query: 361 ctatctatctatctatctatctatctatctatctatct 398
           ||||||||||||||||||| |||||||| |||||||||
Sbjct: 561 ctatctatctatctatctacctatctatgtatctatct 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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